CX287239

Overview
NameCX287239
Unique NameCX287239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287239_ssr448 microsatellite CX287239_ssr448:448..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.103e-51
Identity = 85/118 (72.03%), Postives = 104/118 (88.14%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            MG HSCC +QK+++GLWSPEEDEKL+ YIT HG+GCWS VP+ AGLQRCGKSCRLRWINYLRPD++RG F+ +EE LII LH+ +GNRW+ IA+ LPGRTDNEIKN+WNS +KKK+R+
Sbjct:    1 MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRR 118          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 7.655e-45
Identity = 75/109 (68.81%), Postives = 97/109 (88.99%), Query Frame = 3
Query:   99 QKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            +K+K+GLWSPEED KL++Y+ ++G GCWS+V + AGLQRCGKSCRLRWINYLRPD++RG F+P+EE LII  HS++GNRW+ IA+ LPGRTDNEIKN+WNS IKK+++K
Sbjct:   16 KKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKK 124          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 1.705e-44
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 3
Query:   96 QQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            Q KV++GLWSPEEDEKL  +I  HG GCWS VP  A L RCGKSCRLRWINYLRPD++RG F+ +EE  I++LH ++GNRW+ IASHLPGRTDNEIKN+WNS IKKK+R+
Sbjct:   11 QPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQ 120          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 6.481e-44
Identity = 74/116 (63.79%), Postives = 91/116 (78.45%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC +    +G W+ EED+KLI YI  HG GCW  +P  AGLQRCGKSCRLRWINYLRPD++RG FT EE+ LII LHS++GN+W+ IA+ LPGRTDNEIKNYWN+ +K+K+
Sbjct:    1 MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKL 116          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.486e-43
Identity = 72/116 (62.07%), Postives = 91/116 (78.45%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC +    +G W+ EEDE+L+ YI  HG GCW  +P+ AGL RCGKSCRLRWINYLRPD++RG FT EE++LII LHS++GN+W+ IA  LPGRTDNEIKNYWN+ I++K+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 9.358e-43
Identity = 72/116 (62.07%), Postives = 91/116 (78.45%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC +  + +G W+ EED+ L+ YI  HG GCW  +P  AGLQRCGKSCRLRW+NYLRPD++RG FT EE++LII LHS++GN+W+ IA  LPGRTDNEIKNYWN+ IK+K+
Sbjct:    1 MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 9.358e-43
Identity = 72/116 (62.07%), Postives = 91/116 (78.45%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC +    +G W+ EED++LI YI  HG GCW  +P+ AGL RCGKSCRLRWINYLRPD++RG FT EE+++II LHS++GN+W+ IA  LPGRTDNEIKNYWN+ IK+K+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKL 116          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.222e-42
Identity = 70/116 (60.34%), Postives = 91/116 (78.45%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC +    RG W+ EEDE+L+ YI  HG GCW  +P+ AGL RCGKSCRLRWINYLRPD++RG FT +E+ LI+ LHS++GN+W+ IA+ LPGRTDNEIKNYWN+ +++K+
Sbjct:    1 MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKL 116          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.222e-42
Identity = 71/116 (61.21%), Postives = 91/116 (78.45%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC +    +G W+ EED++L+ YI  HG GCW  +P+ AGL RCGKSCRLRWINYLRPD++RG FT EE++LII LHS++GN+W+ IA  LPGRTDNEIKNYWN+ I++K+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.085e-42
Identity = 70/116 (60.34%), Postives = 91/116 (78.45%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC +    +G W+ EED++L+ YI  HG GCW  +P+ AGL RCGKSCRLRWINYLRPD++RG FT +E+++II LHS++GN+W+ IA  LPGRTDNEIKNYWN+ IK+K+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116          
The following BLAST results are available for this feature:
BLAST of CX287239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYB86_ARATH1.103e-5172.03Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB46_ARATH7.655e-4568.81Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB3_HORVU1.705e-4470.00Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYB32_ARATH6.481e-4463.79Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB4_ARATH5.486e-4362.07Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB3_ARATH9.358e-4362.07Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB30_ANTMA9.358e-4362.07Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB38_MAIZE1.222e-4260.34Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB08_ANTMA1.222e-4261.21Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB6_ARATH2.085e-4260.34Transcription repressor MYB6 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC01006C11SK Veg1 Citrus clementina cDNA clone C01006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287239 ID=CX287239; Name=CX287239; organism=Citrus clementina; type=EST; length=503bp
AGAGAATTCTGTCATATATAGAAGGAGAGGATTAATTGAACAAGAGAAAA
GGCTTATTAATTAACTTAATTATGGGTCACCACTCTTGTTGCAATCAACA
GAAGGTGAAGAGAGGCCTTTGGTCACCCGAGGAAGACGAAAAGCTCATCA
GATATATCACCACTCATGGCTATGGTTGTTGGAGTGAAGTGCCTGAAAAA
GCTGGCCTTCAAAGATGCGGTAAGAGTTGTCGGTTAAGATGGATAAATTA
TTTGAGGCCGGATATCAGAAGAGGAAGATTTACTCCTGAGGAGGAGAAGC
TGATTATTAGCCTTCATAGTGTTGTAGGAAACAGATGGGCGCATATTGCA
AGTCACTTGCCGGGAAGAACGGACAACGAAATAAAGAACTATTGGAATTC
ATGGATCAAAAAGAAGATACGAAAGCCTTCGACGGTGCCTCCTCCTTCCA
CCACCACCAACACACCTAGCAGTGCTACTGAGCATTCCCAAGTAAATTAT
GCC
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