CX287241

Overview
NameCX287241
Unique NameCX287241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig232 contig Ccv1_Contig232:78..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.525e-63
Identity = 115/132 (87.12%), Postives = 120/132 (90.91%), Query Frame = 3
Query:    6 FLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPYEE 401
            FLLSYLTGG+ TPVHTLASGV Y QGIIWEIILTFSLLFTVYATIVDPKKGS+DG GPLLTGFVVGANILAGG FSGASMNPARSFGPALVSG+WTDHWVYWVGPLIGGGLAGFIYE   I R HVP+  +E
Sbjct:  113 FLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYENVLIDRPHVPVADDE 244          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.159e-48
Identity = 89/128 (69.53%), Postives = 106/128 (82.81%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIV-RSHVPI 389
            LL YLTGG++TPVHTL SG+G  QG++ EIILTFSLLF VYATI+DP+  S+ G GPLLTG +VGAN +AGG FSGASMNPARSFGPAL +G WT HW+YW+GPLIGG LAG +YE  F+V R+H P+
Sbjct:  120 LLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPRS-SVPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATGVWTHHWIYWLGPLIGGPLAGLVYESLFLVKRTHEPL 246          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 5.557e-45
Identity = 82/129 (63.57%), Postives = 104/129 (80.62%), Query Frame = 3
Query:    6 FLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRS-HVPI 389
            FLL Y+TGGL+ P H++A+G+G  +G++ EII+TF+L++TVYAT  DPKKGS+  + PL  G +VGANILA GPFSG SMNPARSFGPA+ +GD++ HWVYWVGPLIGGGLAG IY   F+  S HVP+
Sbjct:  117 FLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNVFMGSSEHVPL 245          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.617e-44
Identity = 81/131 (61.83%), Postives = 103/131 (78.63%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPYEE 401
            LL Y+T GL+ P H +A+G+  FQG++ EII+TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+V+GD++ +W+YW GPLIGGGLAGFIY   FI   H P+P  E
Sbjct:  118 LLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFI-GCHTPLPTSE 247          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.024e-44
Identity = 80/131 (61.07%), Postives = 102/131 (77.86%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPYEE 401
            LL Y+T GL+ P H +A+G+   QG++ EII+TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+V+GD++ +W+YW GPLIGGGLAGFIY   FI   H P+P  E
Sbjct:  118 LLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFI-GCHTPLPTSE 247          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.369e-43
Identity = 84/136 (61.76%), Postives = 106/136 (77.94%), Query Frame = 3
Query:    9 LLSYLTGGLS-TPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVR-SHVPIPYEEARF 410
            LL++L    S  PVH L +GVG  +G++ E +LTFSLLF VYAT+VDP++ ++ G+GPLL G VVGAN+LAGGPFSGASMNPARSFGPALV+G W DHWVYWVGPLIGG LAG +Y+  F+ +  H P+P ++  F
Sbjct:  118 LLAFLAVADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRR-AVGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPALVAGVWADHWVYWVGPLIGGPLAGLVYDGLFMAQGGHEPLPRDDTDF 252          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.369e-43
Identity = 80/128 (62.50%), Postives = 101/128 (78.91%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIV-RSHVPI 389
            LL +L+GG+ TPVH L  G+   QG++ E+ILTFSLLF  YA I+DP+   +  +GPLLTG +VGAN LAGG F+GASMNPARSFGPAL +GDWT+HWVYW+GPL+GG LAGF+YE  F+V + H P+
Sbjct:  124 LLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPRS-QVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGDWTNHWVYWIGPLLGGPLAGFVYESLFLVQKMHEPL 250          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.049e-43
Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPYEE 401
            LL ++T GLS P H +A+G+   QG++ EII+TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+ SGD++ +W+YW GPLIGG LAGFIY   FI  +H P+P  E
Sbjct:  118 LLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFSQNWIYWAGPLIGGALAGFIYGDVFIT-AHAPLPTSE 247          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.793e-43
Identity = 79/128 (61.72%), Postives = 102/128 (79.69%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIV-RSHVPI 389
            LL YL+GG+ TPVH L +G+   QG++ E+ILTFSLLF  YA I+DP+   +  +GPLLTG +VGAN LAGG F+GASMNPARSFGPA+ +G WT+HWVYW+GPL+GG LAGF+YE  F+V ++H P+
Sbjct:  126 LLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPRS-QVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATGVWTNHWVYWIGPLLGGSLAGFVYESLFMVNKTHEPL 252          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.976e-42
Identity = 75/128 (58.59%), Postives = 98/128 (76.56%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIP 392
            +L + TGGL+ P   L++GVG     ++EI++TF L++TVYAT +DPK GS+  + P+  GF+VGANILAGG FSGASMNPA +FGPA+VS  WT+HWVYW GPL+GGG+AG IYE FFI  +H  +P
Sbjct:  120 ILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLVGGGIAGLIYEVFFINTTHEQLP 247          
The following BLAST results are available for this feature:
BLAST of CX287241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
TIP41_ARATH4.525e-6387.12Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP41_ORYSJ9.159e-4869.53Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP21_ARATH5.557e-4563.57Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP2_TOBAC1.617e-4461.83Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC8.024e-4461.07Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP44_MAIZE1.369e-4361.76Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
TIP41_MAIZE1.369e-4362.50Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP_ANTMA3.049e-4360.31Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP42_MAIZE6.793e-4361.72Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP11_ARATH1.976e-4258.59Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]

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Properties
Property NameValue
Genbank descriptionC01006D02SK Veg1 Citrus clementina cDNA clone C01006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287241 ID=CX287241; Name=CX287241; organism=Citrus clementina; type=EST; length=631bp
AGGGTTTTCTCCTCAGTTATCTCACTGGTGGATTGAGTACACCAGTCCAC
ACTCTGGCTAGCGGCGTAGGCTATTTTCAAGGGATCATATGGGAGATTAT
TCTGACATTCTCCTTGCTATTTACCGTCTATGCCACTATCGTGGACCCCA
AGAAGGGATCAATTGATGGGCTTGGCCCATTGCTTACTGGGTTTGTGGTG
GGGGCAAACATCTTGGCCGGTGGACCTTTCTCCGGGGCCTCAATGAACCC
GGCACGATCCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATT
GGGTTTACTGGGTTGGCCCTCTCATTGGAGGTGGGCTTGCTGGCTTCATT
TATGAACAGTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGA
AGCCAGATTTTAATTAACTAACCGAATCCAATGGCGTGATGGACCATGGT
GTTATCTGTGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGT
GTGTCTTATGTGTATGAATCCTGTAATATTACAAGCTGCTGTTTCTCTCT
TGGTGTACTTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTT
TTTTGGCTGCTGTCAAAAAAAAAAAAAAAAA
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