CX287255

Overview
NameCX287255
Unique NameCX287255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14421 contig Ccv1_Contig14421:18..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: AIG1_ARATH (Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.479e-35
Identity = 75/137 (54.74%), Postives = 93/137 (67.88%), Query Frame = 3
Query:  123 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            D++  + P   E  +VLVGRTGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +G ++NVIDTPGLFD S  +EF+GKEIVKC+ +A  G+HAVL          QEEE  L +LQ LFG KI DY+IVVF
Sbjct:   32 DEFSASQPHPVEN-IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLIVVF 167          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: P2A03_ARATH (Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.693e-31
Identity = 62/125 (49.60%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  159 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            + +VLVGRTGNGKS+TGN++LG + FKS+  + GVT  CEM R  ++DG ++NVIDTPGL D     + +  EI+ C+ MA++GIHAVL          +EEE+ +++LQ +FG +I DY IVVF
Sbjct:    6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGLCDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDYCIVVF 130          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA4_HUMAN (GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.386e-20
Identity = 51/130 (39.23%), Postives = 78/130 (60.00%), Query Frame = 3
Query:  144 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +  K+ ++V V+DTPG+FD    +    KEI++CI +   G HA+L          +EE  A   +  +FG++   +MI++F
Sbjct:   26 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALL-LVVPLGRYTEEEHKATEKILKMFGERARSFMILIF 153          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA4_RAT (GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVV 530
            +VL+G+TG GKS+TGNSILGR+AF S   +  +T  CE +   + DG+ + V+DTPG+FD         KEI +C+ +   G HA+L           EE  A   L ++F KK   +MI++
Sbjct:   33 IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFDTEVPDADTQKEITRCVALTSPGPHALLLVIPLGCYTV-EEHKATRKLLSMFEKKARRFMILL 152          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA7_HUMAN (GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            +VLVG+TG+GKSAT N+ILG   F SR ++  VT  C+      + G+ + V+DTPGLFD     +   KEI +CI  +  G HA++          +EE+  +  ++ +FGK    +M+++F
Sbjct:   11 IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQ-GRDLLVVDTPGLFDTKESLDTTCKEISRCIISSCPGPHAIV-LVLLLGRYTEEEQKTVALIKAVFGKSAMKHMVILF 131          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA6_MOUSE (GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.311e-15
Identity = 53/123 (43.09%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            ++LVG+TG+GKSATGNSILGR+AF+S+ S+  VT+T + + T   +G+ + VIDTP +F      E   K+I  C  +A  G HAVL           E++A    LQ +FG  I  Y I+VF
Sbjct:  106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFSPQNQPEATAKKI--CDLLASPGPHAVL-LVIQVGRYTAEDQAVARCLQEIFGNTILAYTILVF 224          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA2_HUMAN (GTPase IMAP family member 2 OS=Homo sapiens GN=GIMAP2 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.725e-15
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  147 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +IDTP +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+    + IV+F
Sbjct:   19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGEDAMGHTIVLF 145          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA4_MOUSE (GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.147e-14
Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVV 530
            +VL+G+TG GKS+TGNSILG + F S   +  +T  CE +R    DG+ + V+DTPG+FD         +EI + + +   G HA+L           EE  A   +  +FGK+   +MI++
Sbjct:   33 IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGIFDTEVPDADTQREITRYVALTSPGPHALLLVVPLGRYTV-EEHKATQKILDMFGKQARRFMILL 152          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA8_HUMAN (GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = 3
Query:  156 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            E  ++L+G+  +GKSATGN+ILG+  FKS+ S   V   C+ +  VL++ +VV VIDTP LF   A +E   + I  C+ ++   +HA+L          ++EE A   +Q +FG +   ++I+VF
Sbjct:   10 ELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVV-VIDTPDLFSSIACAEDKQRNIQHCLELSAPSLHALLLVIAIGHFTREDEETA-KGIQQVFGAEARRHIIIVF 133          

HSP 2 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 44/126 (34.92%), Postives = 64/126 (50.79%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPG---LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            +VLVGR+G GKSATGNSILG   F SR  +  VT T +  R    DGQ V V+DTP    + D       + +E+ +C+   + G               +E++ A+  L+ +FG     Y I++F
Sbjct:  441 IVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFNQMLDVEKDPSRLEEEVKRCLSCCEKG-DTFFVLVFQLGRFTEEDKTAVAKLEAIFGADFTKYAIMLF 564          

HSP 3 Score: 67.781 bits (164), Expect = 4.511e-11
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 3
Query:  141 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVT-STCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVV 530
            +P   E TV+LVG+ G GKSA GNSILGR+AF++  S   VT S     R+  K  + V++ID P +         V K I         G HA L          + +EA L ++Q  FG+K F+YMI++
Sbjct:  242 NPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQSVTQSFLSESRSWRK--KKVSIIDAPDISSLKNIDSEVRKHIC-------TGPHAFL-LVTPLGFYTKNDEAVLSTIQNNFGEKFFEYMIIL 362          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA5_HUMAN (GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 47/149 (31.54%), Postives = 82/149 (55.03%), Query Frame = 3
Query:   87 GTFYMMGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            G +  M     +D+   T P+     ++LVG+TG GKSATGNSILG+  F+S+  +  VT TC++ +T   +G+ V V+DTP +F+  A ++ + K I  C  ++  G H +L          Q +  A+  ++ +FG     +++++F
Sbjct:    7 GKYGTMAEGRSEDNLSATPPA---LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV-KTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQ-DTVAIRKVKEVFGTGAMRHVVILF 150          
The following BLAST results are available for this feature:
BLAST of CX287255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
AIG1_ARATH4.479e-3554.74Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 ... [more]
P2A03_ARATH6.693e-3149.60Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabi... [more]
GIMA4_HUMAN2.386e-2039.23GTPase IMAP family member 4 OS=Homo sapiens GN=GIM... [more]
GIMA4_RAT1.225e-1639.34GTPase IMAP family member 4 OS=Rattus norvegicus G... [more]
GIMA7_HUMAN1.770e-1536.59GTPase IMAP family member 7 OS=Homo sapiens GN=GIM... [more]
GIMA6_MOUSE2.311e-1543.09GTPase IMAP family member 6 OS=Mus musculus GN=Gim... [more]
GIMA2_HUMAN6.725e-1534.11GTPase IMAP family member 2 OS=Homo sapiens GN=GIM... [more]
GIMA4_MOUSE1.147e-1436.07GTPase IMAP family member 4 OS=Mus musculus GN=Gim... [more]
GIMA8_HUMAN1.498e-1436.51GTPase IMAP family member 8 OS=Homo sapiens GN=GIM... [more]
GIMA5_HUMAN1.498e-1431.54GTPase IMAP family member 5 OS=Homo sapiens GN=GIM... [more]

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Properties
Property NameValue
Genbank descriptionC01006E06SK Veg1 Citrus clementina cDNA clone C01006E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287255 ID=CX287255; Name=CX287255; organism=Citrus clementina; type=EST; length=586bp
AAAAAGTCAAGTCTCTTTCCCTTTCTCATCTCTTCATACCCAGGCCAACG
CAATCCCTTTTGCTCTCCTGTCTTCGCAAGTAAATTGGAACTTTTTATAT
GATGGGAGGAAGTGCGATTGATGATGATTGGGAGCTTACTTCTCCATCTA
ATGGGGAGCGCACTGTGGTTTTAGTTGGCCGTACTGGCAATGGCAAAAGT
GCGACGGGCAACAGTATTCTTGGAAGAAGAGCCTTCAAGTCAAGGGCTAG
TTCATCTGGTGTTACTAGTACCTGTGAAATGCAGAGAACCGTGCTCAAAG
ATGGCCAAGTTGTTAATGTCATTGATACCCCTGGACTTTTTGATTTTTCC
GCTGGCTCTGAGTTTGTTGGCAAGGAAATTGTCAAATGTATCGGTATGGC
CAAGGATGGGATCCATGCAGTCCTTGTAGTTTTCTCTGTTAGAAGCCGTT
TTTCTCAAGAGGAAGAAGCTGCACTACACAGTTTGCAGACCTTGTTCGGG
AAAAAAATTTTTGACTATATGATTGTTGTTTTCACTGGAGGGGATGAACT
TGAAGATAATGATGAAACGTTAGAAGATTATTTGGG
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