CX287271
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_PONAB (Transcription initiation factor TFIID subunit 13 OS=Pongo abelii GN=TAF13 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23 Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = -3 Query: 262 GTRETTSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 567 G E KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E+++++ HKA IG ++G++ VED ++LIRKDP K R +LL+M EELK+ARKAF+ Sbjct: 19 GGAEGGQGKRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_MOUSE (Transcription initiation factor TFIID subunit 13 OS=Mus musculus GN=Taf13 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23 Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = -3 Query: 262 GTRETTSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 567 G E KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E+++++ HKA IG ++G++ VED ++LIRKDP K R +LL+M EELK+ARKAF+ Sbjct: 19 GGAEGGQGKRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_HUMAN (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens GN=TAF13 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23 Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = -3 Query: 262 GTRETTSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 567 G E KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E+++++ HKA IG ++G++ VED ++LIRKDP K R +LL+M EELK+ARKAF+ Sbjct: 19 GGAEGGQGKRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_BOVIN (Transcription initiation factor TFIID subunit 13 OS=Bos taurus GN=TAF13 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23 Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = -3 Query: 262 GTRETTSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 567 G E KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E+++++ HKA IG ++G++ VED ++LIRKDP K R +LL+M EELK+ARKAF+ Sbjct: 19 GGAEGGQGKRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_DICDI (Transcription initiation factor TFIID subunit 13 OS=Dictyostelium discoideum GN=taf13 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.865e-22 Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = -3 Query: 247 SFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE---VDEEK 549 S KRKR +F K+L+HMMYGFGD PL E++ L+E++V E++ ++ KA + +KRGK ED ++L+RKDP K R ELL M EELK+A+KAF+ V+EE+ Sbjct: 2 STKRKR-MFSKELKHMMYGFGDVREPLHESIDLLEELVFEFIQEMTLKAAQVSNKRGKFQTEDLVFLVRKDPKKYYRVIELLRMNEELKKAKKAFDETNVEEEE 104
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_SCHPO (Transcription initiation factor TFIID subunit 13 OS=Schizosaccharomyces pombe GN=taf13 PE=2 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 1.171e-16 Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = -3 Query: 250 RKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFEVDEE 540 R++ +F KDL+ +MY FGDD NP P+++ ++E+IVV+Y++++ +A I R K+ V+DF + +R DP KL R ELL +Q+ + R + +++ Sbjct: 13 RRQHLFTKDLKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIAGNRNKVKVDDFKFALRDDPKKLGRVEELLVLQKMIADTRNVMKYNKD 109
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_YEAST (Transcription initiation factor TFIID subunit 13 OS=Saccharomyces cerevisiae GN=TAF13 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12 Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = -3 Query: 250 RKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLA----HKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAF-EVDEE 540 +K +F KD+ ++Y +GD P PL TV ++++V Y+ D+ H AQ+ S+R KL +EDF + +RKDP KL R EL++ + + +A+K F E D + Sbjct: 6 KKTNLFNKDVSSLLYAYGDVPQPLQATVQCLDELVSGYLVDVCTNAFHTAQN--SQRNKLRLEDFKFALRKDPIKLGRAEELIATNKLITEAKKQFNETDNQ 105 The following BLAST results are available for this feature:
BLAST of CX287271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287271 ID=CX287271; Name=CX287271; organism=Citrus clementina; type=EST; length=650bpback to top |