CX287274

Overview
NameCX287274
Unique NameCX287274
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14839 contig Ccv1_Contig14839:27..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287274 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.350e-22
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 2 
Query:   17 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLVVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYD 343
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYD
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYD 98

HSP 2 Score: 27.335 bits (59), Expect = 1.350e-22
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  429 LYSGETRSKHH 461
            +YSGETRSKHH
Sbjct:  100 MYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CX287274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.350e-2249.54Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
back to top
Properties
Property NameValue
Genbank descriptionC01006G03SK Veg1 Citrus clementina cDNA clone C01006G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287274 ID=CX287274; Name=CX287274; organism=Citrus clementina; type=EST; length=538bp
AATTTTAAATTTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAG
GGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACA
CCCTTAGTAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTT
CCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAG
TGACGCCGACGACTCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGC
GTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGT
CTTTGACAAGCCCACACATCCTAACTCTCCCACTGTTTATGACTGCAACC
AAATAAAGGCTAAGAGGAAGGAGGAAAACGTGGCACTCTGTCTCATGGGC
GCGTTGAAATAGATCTTGTCTTATTCAGCTTTACAGTGGGGAGACTAGGA
GCAAGCATCATCACTGAGTGGATGATACGCTCCAGCGATGTAAATGAATG
TGATGGGTCACCAACTCACCGGATGAGTTGCCTGCAGT
back to top