CX287282

Overview
NameCX287282
Unique NameCX287282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig44 contig Ccv1_Contig44:1..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287282 vs. ExPASy Swiss-Prot
Match: ATPX_SPIOL (ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.045e-38
Identity = 86/130 (66.15%), Postives = 94/130 (72.31%), Query Frame = 2
Query:  248 PSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIK 637
            PSLA EIEKA+LFDFNLTLPIIM EFL LMFALDKIYY+PLG+FMD+RD +IKE+L+ VKDTS EVKQLEEQ               L KMKKETQLEVE KLA GRKKI            +QKEDTIK
Sbjct:   72 PSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALGSLEQQKEDTIK 201          
BLAST of CX287282 vs. ExPASy Swiss-Prot
Match: ATPX_CHLRE (ATP synthase subunit b', chloroplastic OS=Chlamydomonas reinhardtii GN=ATPG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.197e-12
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 2
Query:  251 SLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQL 454
            ++ A  E   +FDFNLTLP++  EFL+LM  L+K +++P+G  +DERDN I+ KL SVKD + +V +L
Sbjct:   57 AMPAAAEAGKIFDFNLTLPVMAGEFLLLMVFLEKTWFTPVGKVLDERDNLIRSKLGSVKDNTGDVDKL 124          
BLAST of CX287282 vs. ExPASy Swiss-Prot
Match: ATPX_TRIEI (ATP synthase subunit b' OS=Trichodesmium erythraeum (strain IMS101) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 39/119 (32.77%), Postives = 57/119 (47.90%), Query Frame = 2
Query:  269 EKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKE 625
            EK  LFD N TLP++ ++FL+L F LDKI+Y PLG  +D R + I+E     K+   + KQL EQ               +   + E +     K+AV +K+             +QKE
Sbjct:   15 EKGGLFDINATLPLMAIQFLLLAFVLDKIFYKPLGKAIDSRADYIRENQVKAKERLAKAKQLAEQYEQEFAQTRQKSQVVIVAAQAEAEKIAATKVAVAQKEAQVKREQAAQEIEKQKE 133          
The following BLAST results are available for this feature:
BLAST of CX287282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATPX_SPIOL3.045e-3866.15ATP synthase subunit b', chloroplastic OS=Spinacia... [more]
ATPX_CHLRE2.197e-1248.53ATP synthase subunit b', chloroplastic OS=Chlamydo... [more]
ATPX_TRIEI1.090e-1132.77ATP synthase subunit b' OS=Trichodesmium erythraeu... [more]
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Properties
Property NameValue
Genbank descriptionC01006G11SK Veg1 Citrus clementina cDNA clone C01006G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287282 ID=CX287282; Name=CX287282; organism=Citrus clementina; type=EST; length=638bp
AGGAGCAAACGCAAACGCAAAACTAGTAAAATTTCAATCTGCCATGGCTA
GCATGATCGTGGCATCCTCCAATGCCAAGCCACTCTCTCCACTGCCCATT
CCTTCTCAATCACCAAAACCCAGAATCCAAATCCCCCAAATCAAAATCCC
ATCTTCTGAAAAAATCCCACAAAAGTTGCTTAAACTCTCATCCTCCGCTC
TCAAATCACTCTCCGCTGTCGCCGTCACGTCGCTAGCATTTTCCCCTCCG
TCTCTGGCAGCCGAAATCGAAAAGGCAGCACTCTTCGATTTCAACCTAAC
CTTGCCCATTATCATGGTTGAGTTCTTGGTTCTGATGTTCGCGTTGGACA
AGATTTACTACTCTCCCCTCGGGAACTTCATGGACGAGAGGGACAATGCT
ATCAAGGAAAAGCTCAACAGCGTCAAGGACACTTCCGAGGAAGTGAAGCA
GCTAGAAGAGCAAGCTGCTGCCGTCATGAGGGCTGCCAGAGCGGAGATAT
CGGCGGCCTTGACTAAGATGAAGAAGGAGACTCAGTTGGAAGTTGAGCAG
AAGCTTGCTGTGGGGAGGAAGAAAATTGAGGCTGAGCTTCAGGAAGCTTT
GGCTAATTTGGAGAGGCAAAAGGAGGATACCATTAAGT
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