CX287303

Overview
NameCX287303
Unique NameCX287303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:627..1042. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287303 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1
Query:    1 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 132
            NFTTGKGKVNL DSNVRPLEVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:  150 NFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWVSQYIK 193          
BLAST of CX287303 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1
Query:    1 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 132
            NFTTGKGKV+L  SNVRPLEVFMCSIVRKMGYG+GFKWLSQYIK
Sbjct:  150 NFTTGKGKVDLVGSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193          
BLAST of CX287303 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.945e-17
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    1 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 129
            NFTTGKGKV L DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:  150 NFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192          
BLAST of CX287303 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.310e-15
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1
Query:    7 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 132
            TTGKG +NLA +NVRP+EVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:  152 TTGKGNINLAGTNVRPIEVFMCSIVRKMGYGEGFKWMSQYIK 193          
BLAST of CX287303 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 NFTTGKGKVNLA--DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 129
            NFTTGKGKV  A  DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:  150 NFTTGKGKVTTAGGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 194          
BLAST of CX287303 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 33/39 (84.62%), Postives = 39/39 (100.00%), Query Frame = 1
Query:   16 KGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 132
            +GKVNLADSNVRP+EVFMCSIVR+MGYG+GF+W+SQYIK
Sbjct:  160 RGKVNLADSNVRPVEVFMCSIVRQMGYGEGFRWMSQYIK 198          
BLAST of CX287303 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    7 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 129
            TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:  157 TTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CX287303 vs. ExPASy Swiss-Prot
Match: SAR1A_PIG (GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    7 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 129
            TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:  157 TTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CX287303 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    7 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 129
            TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:  157 TTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CX287303 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    7 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 129
            TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:  157 TTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
The following BLAST results are available for this feature:
BLAST of CX287303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SAR1A_ARATH1.653e-1893.18GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM1.828e-1790.91GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_ARATH6.945e-1790.70GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR2_SOLLC1.310e-1583.33GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1B_BRACM2.918e-1586.67GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1_TOBAC2.470e-1484.62GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1A_PONAB1.499e-1165.85GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_PIG1.499e-1165.85GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A P... [more]
SAR1A_MOUSE1.499e-1165.85GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1A_HUMAN1.499e-1165.85GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]

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Properties
Property NameValue
Genbank descriptionC01008A10SK Veg1 Citrus clementina cDNA clone C01008A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287303 ID=CX287303; Name=CX287303; organism=Citrus clementina; type=EST; length=418bp
AATTTCACCACTGGGAAGGGGAAGGTTAATCTAGCGGACTCAAATGTCCG
TCCACTGGAGGTGTTTATGTGTAGCATAGTTCGCAAAATGGGATATGGTG
ATGGTTTCAAATGGCTCTCTCAATACATTAAGTAGGGTAATGCTCAGGAA
GTGTTATAGAAGTAATGCAGATTTCAAAATTTCACCCATGCCTACTACAC
CCTGTTTCACCAAAAAAAAATTGTGTTTATCTACTTGTTTGATCTTTTAG
TCTGTTAGTGGGACTTGAACCAGAGGTACTGTGTTTTGAGTCTGTTTGGA
AGGTGGTAGTTATGTTACTGCTCTGTAAAATTTACTTGTGGATAGCAGGT
CATTATCTGGTATTGTAGTTTTGTCAAATTACTTGCACCTATTGTCATGT
TCTGCTGTGGAGCAGATA
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