CX287382

Overview
NameCX287382
Unique NameCX287382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14439 contig Ccv1_Contig14439:56..457. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287382 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.741e-23
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1
Query:  157 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSN-----GSESVAAATVDVQ 393
            M+H ETGCQ P EGPILCINNCGFFGS ATMNMCSKC+K++++KQ+QAKLAASSI SIVN   S       G   VA A V+V+
Sbjct:    1 MEHKETGCQQP-EGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVNGGDSGKEPIIAGHAEVAVAQVEVK 83          
BLAST of CX287382 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. indica GN=SAP8 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.741e-23
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1
Query:  157 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSN-----GSESVAAATVDVQ 393
            M+H ETGCQ P EGPILCINNCGFFGS ATMNMCSKC+K++++KQ+QAKLAASSI SIVN   S       G   VA A V+V+
Sbjct:    1 MEHKETGCQQP-EGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVNGGDSGKEPIIAGHAEVAVAQVEVK 83          
BLAST of CX287382 vs. ExPASy Swiss-Prot
Match: SAP4_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Oryza sativa subsp. japonica GN=SAP4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.474e-22
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1
Query:  157 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVN-------ETSSSNGSESVAAATVDVQ 393
            M+H E GCQ P EGPILCINNCGFFGS ATMNMCSKC+K++++K++QAKLAASSI SIVN          +++GS +VA A V+ +
Sbjct:    1 MEHKEAGCQQP-EGPILCINNCGFFGSAATMNMCSKCHKEMIMKEEQAKLAASSIDSIVNGCDGGKEHIVAASGSTAVAVAQVEAK 85          
BLAST of CX287382 vs. ExPASy Swiss-Prot
Match: SAP2_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Arabidopsis thaliana GN=SAP2 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  157 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASS 402
            MDHD+TGCQ+PPEGP LC NNCGFFGS ATMNMCSKC+KD++ +Q+Q    AS++      +SS+   E+  AA VD++  S
Sbjct:    1 MDHDKTGCQSPPEGPKLCTNNCGFFGSAATMNMCSKCHKDMLFQQEQGAKFASAVSG--TSSSSNIIKETFTAALVDIETKS 80          
The following BLAST results are available for this feature:
BLAST of CX287382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SAP8_ORYSJ1.741e-2365.48Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ORYSI1.741e-2365.48Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ORYSJ1.474e-2260.47Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP2_ARATH1.630e-2156.10Zinc finger A20 and AN1 domain-containing stress-a... [more]
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Properties
Property NameValue
Genbank descriptionC01008H11SK Veg1 Citrus clementina cDNA clone C01008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287382 ID=CX287382; Name=CX287382; organism=Citrus clementina; type=EST; length=402bp
ACGAGGACGTCTCTAATCGGTTTTTGCCTGCTCTCTCCCCGTAGGCCGAT
CTGGTCCATTTAATTTTAGGGGCTCATTGGATGCTGGCTTGAGCTCGGGG
ATCGGCTTAAGGGATTCATTGCTGTTTCTTCTGTTGCTCGCAGGGGTGGT
GAAAACATGGACCATGATGAGACTGGATGCCAAGCTCCTCCTGAGGGCCC
TATCTTGTGCATCAACAATTGTGGTTTCTTTGGAAGTGTGGCTACTATGA
ATATGTGTTCCAAATGCTACAAGGATATAATGCTGAAACAGGATCAAGCT
AAGCTTGCTGCTTCATCTATTGGAAGCATTGTGAATGAAACGTCAAGCAG
CAATGGAAGTGAATCTGTTGCTGCTGCCACTGTTGATGTGCAAGCTAGTT
CA
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