CX287385

Overview
NameCX287385
Unique NameCX287385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length466
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287385 vs. ExPASy Swiss-Prot
Match: COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.944e-23
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:  154 NTTGLHVHRKRIAHMTFFWGHNTQVLFPGWPGSSTGMYXXXXXXXXXXXXXXEWLSHYNIVKPG---ASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAV 465
            N  G H H K + HMTFFWG NT+VLF GWPG+S+GMY              EWL+H ++++     ++  AAGL +T ++ +R+GLAY+V+LAVMSFN G+F+ A+
Sbjct:   30 NEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVAL 136
The following BLAST results are available for this feature:
BLAST of CX287385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPT1_ARATH3.944e-2346.73Copper transporter 1 OS=Arabidopsis thaliana GN=CO... [more]
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Properties
Property NameValue
Genbank descriptionC01009A02SK Veg1 Citrus clementina cDNA clone C01009A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287385 ID=CX287385; Name=CX287385; organism=Citrus clementina; type=EST; length=466bp
CGAGGGACAAAACAGCCCCCTGTCTGTCCTTATCAAGAATACGTAGTGTA
ACATCAAACACAAAACAGATAATTATCACTAAGAACACGAGATACCACGA
TAGCGATGGCTTCACGTCACCATACAGTGAGGCCCGTAACAACGGAGGCG
TGGAACACAACGGGGTTGCACGTTCACCGCAAAAGGATTGCGCACATGAC
GTTCTTCTGGGGCCACAACACGCAGGTTTTGTTCCCCGGGTGGCCGGGTT
CGAGCACCGGCATGTACGTACTGGCCTTGGTATTTGTATTTTCGCTGGCT
GTGATTGTTGAGTGGCTAAGTCACTACAATATTGTGAAGCCGGGGGCTAG
CCGCGTGGCAGCTGGGTTGTTCAAGACTGGGTTGCACGGTGTGCGTGTCG
GGCTGGCTTACATGGTCGTGCTTGCCGTCATGTCGTTTAATGGTGGCATT
TTTATTGCTGCTGTCG
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