CX287390

Overview
NameCX287390
Unique NameCX287390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length449
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12470 contig Ccv1_Contig12470:252..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287390 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.351e-14
Identity = 46/162 (28.40%), Postives = 80/162 (49.38%), Query Frame = 1
Query:    1 TSVPSKYFFEKD-------LNDDCINSEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIR-WGTSFNVNVDKTLFWRDYLKIHVHPQFNA-----PQNPLGFSKTIQEYCKRVR 447
            +++P +Y   KD       + +   N+E   +P ID   + S + + R K  + +  A + WG   ++NHG+ + L D++ +A ++FFDL  EQK +YA  +    I+ +G+    N    L W DY    V+P+        PQ P  + +   EY K++R
Sbjct:   20 STIPKEYIRPKDELVNIGDIFEQEKNNEGPQVPTIDLKEIESDNEKVRAKCREKLKKAAVDWGVMHLVNHGISDELMDKVRKAGKAFFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLR 181          
BLAST of CX287390 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.328e-13
Identity = 47/161 (29.19%), Postives = 75/161 (46.58%), Query Frame = 1
Query:    4 SVPSKYFFEKD----LNDDCINSEAET---IPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIR-WGTSFNVNVDKTLFWRDYLKIHVHPQFNA-----PQNPLGFSKTIQEYCKRVR 447
            S+P +Y   K+    +ND  +  + E    +P ID   + S   + R   I+ +  A L WG   +INHG+P  L + + +A E FF LS E+K +YA  +    I+ +G+    N    L W DY     +P+        P+ P  + +   EY K +R
Sbjct:   17 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLR 177          
BLAST of CX287390 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12
Identity = 41/137 (29.93%), Postives = 62/137 (45.26%), Query Frame = 1
Query:   55 NSEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIR-WGTSFNVNVDKTLFWRDYLKIHVHPQFNA-----PQNPLGFSKTIQEYCKRVR 447
            +SE   +P ID   + S   E R K  + +  A   WG   +INHG+P  L D +  A + FF+L  E+K  YA  +    ++ +G+    N    L W DY    V+P+        P  P  +     EY K++R
Sbjct:   47 SSEGPQLPTIDLEEMDSRDEEGRKKCHEELKKAATDWGVMHLINHGIPEELIDRVKAAGKEFFELPVEEKEAYANDQAAGNVQGYGSKLANNASGQLEWEDYFFHCVYPEHKTDLSIWPTKPPDYIPATSEYAKQLR 183          
BLAST of CX287390 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 48/158 (30.38%), Postives = 81/158 (51.27%), Query Frame = 1
Query:    1 TSVPSKYFF---EKDLNDDCINSEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIR-WGTSFNVNVDKTLFWRDYLKIHVHP-----QFNAPQNPLGFSKTIQEYCKRVR 447
            T+VP +Y     +K   DD  + + E IPIID   L S +       ++ +  AC +WGFF+++NHG+ ++  D++    + FF+L  E+K+++  +   D I  +G +F V+ D+ L W D     V P         P+ PL F  T++ Y   V+
Sbjct:   27 TTVPPRYVRSDQDKTEVDDDFDVKIE-IPIIDMKRLCSSTTMD--SEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRP--DEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQ 179          
The following BLAST results are available for this feature:
BLAST of CX287390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LDOX_MALDO1.351e-1428.40Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
LDOX_ARATH3.328e-1329.19Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
LDOX_PERFR4.806e-1229.93Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
SRG1_ARATH9.064e-1130.38Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionC01009A07SK Veg1 Citrus clementina cDNA clone C01009A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287390 ID=CX287390; Name=CX287390; organism=Citrus clementina; type=EST; length=449bp
ACATCTGTTCCTTCTAAGTATTTCTTTGAAAAAGATCTTAATGATGATTG
CATAAACTCAGAAGCAGAAACAATCCCCATCATAGACTTTTCCATGCTTA
CTTCTGGTTCTCCGGAACAACGTTACAAGACAATCCAAGCCATCGGCAAT
GCATGCCTCAAATGGGGTTTCTTTGAGGTAATTAATCATGGAGTACCGAA
CACATTGCGAGATGAGATGATAAGGGCAAGTGAAAGTTTCTTCGATCTGT
CGGACGAGCAAAAGAGAGAGTACGCAGGAAAGAAGCTGTTTGATCCAATA
AGATGGGGGACAAGCTTCAACGTTAATGTCGACAAGACATTATTCTGGAG
GGATTACCTGAAGATCCACGTCCATCCCCAGTTCAATGCTCCTCAAAACC
CTCTTGGCTTCAGTAAAACCATACAAGAATATTGCAAAAGAGTTCGAGA
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