CX287404

Overview
NameCX287404
Unique NameCX287404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig278 contig Ccv1_Contig278:471..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_TOBAC (Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 4.437e-60
Identity = 115/123 (93.50%), Postives = 122/123 (99.19%), Query Frame = 1
Query:   16 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKP 384
            AEF+RICKDL+SIGDTVVISVTKEGVKFSTRGDIGTANIV RQNTTVDKPEEAT+IEM+EPVSLTFALRY+NSFT+ATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE+ETKP
Sbjct:  142 AEFSRICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPEEATVIEMNEPVSLTFALRYLNSFTKATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEEETKP 264          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_SOYBN (Proliferating cell nuclear antigen (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 7.568e-60
Identity = 113/125 (90.40%), Postives = 124/125 (99.20%), Query Frame = 1
Query:   16 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQV 390
            +EFARICKDL+SIGDTVVISVTKEGVKFST+GDIGTANIV RQNT+VDKPEEAT+IEM+EPVSLTFALRYMNSFT+ATPLSNTVTISLS+ELPVVVEYKIAEMGY+RFYLAPKIEEDE++TKPQV
Sbjct:  112 SEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTSVDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSNTVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDEEDTKPQV 236          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA1_DAUCA (Proliferating cell nuclear antigen OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 2.876e-59
Identity = 114/123 (92.68%), Postives = 122/123 (99.19%), Query Frame = 1
Query:   16 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKP 384
            AEFARICKDL+SIGDTVVISVTKEGVKFSTRGDIGTANIV RQNTTVDKPEEAT+IEM+EPVSLTFALRYMNSFT+A+PLS+TVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE+EDE+KP
Sbjct:  142 AEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPEEATVIEMNEPVSLTFALRYMNSFTKASPLSSTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEEEDESKP 264          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_CATRO (Proliferating cell nuclear antigen OS=Catharanthus roseus PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 2.692e-57
Identity = 111/120 (92.50%), Postives = 118/120 (98.33%), Query Frame = 1
Query:   16 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 375
            AEFARICKDL+SIGDTVVISVTKEGVKFSTRGDIGTANIV RQNTTVDKP+EATIIEM+EPVSLTFALRY+NSFT+ATPLSN VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED++E
Sbjct:  142 AEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPDEATIIEMNEPVSLTFALRYLNSFTKATPLSNNVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDDEE 261          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_POPNI (Proliferating cell nuclear antigen OS=Populus nigra GN=PCNA PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.515e-57
Identity = 109/120 (90.83%), Postives = 118/120 (98.33%), Query Frame = 1
Query:   16 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 375
            AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPE+AT+IEM+EPVS+TFALRYMNSFT+ATPLSNTVTIS+S +LPVVVEYKIAEMGY+RFYLAPK+EEDE E
Sbjct:  142 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEDATVIEMNEPVSMTFALRYMNSFTKATPLSNTVTISMSPDLPVVVEYKIAEMGYVRFYLAPKMEEDEPE 261          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_PEA (Proliferating cell nuclear antigen OS=Pisum sativum GN=PCNA PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.515e-57
Identity = 108/124 (87.10%), Postives = 122/124 (98.39%), Query Frame = 1
Query:   16 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQ 387
            AEFARICKDL+SIGDTVVI+V+KEGVKFST+GDIG+ANIV RQNTTVDKPEEAT+IEM+EPV+L FALRYMNSFT+ATPLS++VTISLS+ELPVVVEYKIAEMGY+RFYLAPKIEEDE+ETKPQ
Sbjct:  142 AEFARICKDLSSIGDTVVIAVSKEGVKFSTKGDIGSANIVCRQNTTVDKPEEATVIEMNEPVALQFALRYMNSFTKATPLSSSVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDEEETKPQ 265          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA2_ARATH (Proliferating cell nuclear antigen 2 OS=Arabidopsis thaliana GN=At2g29570 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.929e-55
Identity = 108/123 (87.80%), Postives = 119/123 (96.75%), Query Frame = 1
Query:   19 EFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQ 387
            EF+RICKDL+SIGDTVVISVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM+EPVSL+FALRYMNSFT+ATPLS TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEE+ED TKP+
Sbjct:  143 EFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSETVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEED-TKPE 264          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_BRANA (Proliferating cell nuclear antigen OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.250e-54
Identity = 104/119 (87.39%), Postives = 117/119 (98.32%), Query Frame = 1
Query:   19 EFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 375
            EF+RICKDL++IGDTVVISVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM+EPVSL+FALRYMNSFT+ATPLS+TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEEDE++
Sbjct:  143 EFSRICKDLSTIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEDEED 261          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA1_ARATH (Proliferating cellular nuclear antigen 1 OS=Arabidopsis thaliana GN=PCNA PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 1.633e-54
Identity = 105/118 (88.98%), Postives = 115/118 (97.46%), Query Frame = 1
Query:   19 EFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 372
            EF+RICKDL+SIGDTVVISVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM EPVSL+FALRYMNSFT+ATPLS+TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEE+ED
Sbjct:  143 EFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEED 260          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA2_DAUCA (Proliferating cell nuclear antigen large form OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 6.205e-54
Identity = 105/119 (88.24%), Postives = 115/119 (96.64%), Query Frame = 1
Query:   16 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 372
            AEFARICKDL++IGDTVVISVTKEGVKFSTRGDIGTANIV RQNT+VDKPE+ATIIEM E VSLTFALRYMNSFT+ATPL+N VTISLSSELPVVVEYKIAEMGYIR+YLAPKIEE+++
Sbjct:  142 AEFARICKDLSTIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTSVDKPEDATIIEMQETVSLTFALRYMNSFTKATPLANQVTISLSSELPVVVEYKIAEMGYIRYYLAPKIEEEDE 260          
The following BLAST results are available for this feature:
BLAST of CX287404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PCNA_TOBAC4.437e-6093.50Proliferating cell nuclear antigen OS=Nicotiana ta... [more]
PCNA_SOYBN7.568e-6090.40Proliferating cell nuclear antigen (Fragment) OS=G... [more]
PCNA1_DAUCA2.876e-5992.68Proliferating cell nuclear antigen OS=Daucus carot... [more]
PCNA_CATRO2.692e-5792.50Proliferating cell nuclear antigen OS=Catharanthus... [more]
PCNA_POPNI3.515e-5790.83Proliferating cell nuclear antigen OS=Populus nigr... [more]
PCNA_PEA3.515e-5787.10Proliferating cell nuclear antigen OS=Pisum sativu... [more]
PCNA2_ARATH1.929e-5587.80Proliferating cell nuclear antigen 2 OS=Arabidopsi... [more]
PCNA_BRANA1.250e-5487.39Proliferating cell nuclear antigen OS=Brassica nap... [more]
PCNA1_ARATH1.633e-5488.98Proliferating cellular nuclear antigen 1 OS=Arabid... [more]
PCNA2_DAUCA6.205e-5488.24Proliferating cell nuclear antigen large form OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC01009B09SK Veg1 Citrus clementina cDNA clone C01009B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287404 ID=CX287404; Name=CX287404; organism=Citrus clementina; type=EST; length=484bp
GAATTGGCACGAGGAGCTGAGTTTGCTAGAATTTGTAAAGATCTTGCCAG
CATTGGTGACACAGTCGTGATTTCTGTCACAAAGGAGGGTGTGAAGTTCT
CTACCAGAGGTGATATTGGAACTGCTAATATTGTGCTCAGGCAAAATACT
ACAGTAGACAAGCCAGAAGAAGCAACAATAATTGAAATGCATGAGCCAGT
GTCATTGACTTTTGCTCTGAGATACATGAATTCATTCACAAGGGCTACTC
CACTGTCGAATACTGTTACTATCAGCCTATCCTCAGAATTGCCAGTTGTG
GTCGAATACAAGATTGCTGAGATGGGTTATATTAGATTCTACTTGGCACC
CAAGATAGAAGAAGATGAGGATGAGACCAAGCCTCAAGTTTAAGTGTCAT
TTGGCACGTAGGCTATGGCATTTTGTTGAATCAAGTTACTCCTATATTTT
AAGTTTGCTTTTAGAATGTTTCTCGTAAATCTTC
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