CX287420

Overview
NameCX287420
Unique NameCX287420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287420_ssr133 microsatellite CX287420_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287420 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.554e-22
Identity = 57/92 (61.96%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:  151 QEEDKKPVDQSAHINLKVKGQ--------------------------SVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALG 348
            QEEDKKP D  AHINLKVKGQ                          SV++NSIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG+ G
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGG 96
[Close]
BLAST of CX287420 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.263e-20
Identity = 56/93 (60.22%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:  154 EEDKKPVDQS---AHINLKVKGQ--------------------------SVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 345
            EEDKKP       AHINLKVKGQ                          SV++N+IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:    6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98
The following BLAST results are available for this feature:
BLAST of CX287420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SMT3_ARATH4.554e-2261.96Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ3.263e-2060.22Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionC01009D02SK Veg1 Citrus clementina cDNA clone C01009D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287420 ID=CX287420; Name=CX287420; organism=Citrus clementina; type=EST; length=527bp
GCTCTTCACAGTGTCGGTTTTTTGTGCTTATTTGTAGTCGCAGAGGGGAC
GACAAAACCCTAACCAGAGGCGCAGAAACAAAGAGAGGGTAAAATTCAAT
TCTAAGAACCTGTAAGGATGTCAGCGACCGGTGGCGGCGGCGGCGGTGGT
CAGGAGGAGGACAAGAAGCCCGTCGATCAGTCGGCGCACATTAACCTCAA
AGTCAAGGGCCAGTCGGTGGAGTTAAACTCTATTGCTTTCTTGTTTGATG
GGCGGAGACTCCGAGGAGAGCAGACTCCAGATGAGCTTGAGATGGAGGAT
GGAGATGAAATTGATGCAATGCTGCATCAGACTGGAGGTGCGCTTGGAAG
CGGTTAGCTGCAGTTTGAAATATTTTGAGCATCGCTGGCGGACTTGATGT
TTGAGTTTTTTAAATTAGCCTATATCTATGGAAATATTACTGTAAATGAT
GACTTGGATCTTATAATTAACTTGAATTTAAGTCATGGTTTATTATCAAA
AAAAAAAAAAAAAAAAAAAAACTCGGG
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