CX287429

Overview
NameCX287429
Unique NameCX287429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12319 contig Ccv1_Contig12319:47..601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287429 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 1.972e-66
Identity = 129/190 (67.89%), Postives = 152/190 (80.00%), Query Frame = 2
Query:    2 SMALKSFTGLRQSPQEQQHPHFIAQ-----ALP-RQQKFRVSAAKTSPKLTNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYD 553
            ++ LKSFTGLRQS  EQ +  F++      +LP R+   RV+AA+ +PKL+NR LRV             ETLAQ G+ET LIERK+DNCKPCGGAIPLCMVGEF+LPLDIIDR+VTKMKMISPSN+AVDIG+TLK HEYIGMVRREVLDAYLRERAEK+GA+VINGLF+KMD P N++ PY L+YTEYD
Sbjct:    4 TVTLKSFTGLRQSSTEQTN--FVSHVPSSLSLPQRRTSLRVTAARATPKLSNRKLRVAVIGGGPAGGAAAETLAQGGIETILIERKMDNCKPCGGAIPLCMVGEFNLPLDIIDRRVTKMKMISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWDSPYTLHYTEYD 191          
BLAST of CX287429 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 9.786e-66
Identity = 127/187 (67.91%), Postives = 151/187 (80.75%), Query Frame = 2
Query:    2 SMALKSFTGLRQSPQEQQHPHFIAQALPRQQ---KFRVSAAKTSPKLTNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYD 553
            S+ALK+FTGLRQS  E  +   ++++LP  Q   + R++A+K+SP++  RNLRV             ETLA+ G+ETFLIERK+DNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLR+RA + GASV+NGLF+KMD+P+    PYVL+YT YD
Sbjct:    3 SIALKTFTGLRQSSPEN-NSITLSKSLPFTQTHRRLRINASKSSPRVNGRNLRVAVVGGGPAGGAAAETLAKGGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKMDMPKAPNAPYVLHYTAYD 188          
BLAST of CX287429 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.413e-50
Identity = 101/157 (64.33%), Postives = 114/157 (72.61%), Query Frame = 2
Query:   86 RQQKFRVSAAKTSPKL-TNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYD 553
            R  +    AA +SPKL + R LRV             E LA+ GVET LIERKLDNCKPCGGAIPLCMV EFDLPLD++DRKV KMKMISPSNVAVDIG TL PHEYIGMVRREVLDAYLR RAE  GA V+NGLF++ + P+     YV++Y  YD
Sbjct:   30 RMARLVTRAAASSPKLPSGRRLRVAVVGGGPAGGAAAEALAKGGVETVLIERKLDNCKPCGGAIPLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYD 186          
BLAST of CX287429 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.745e-41
Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 2
Query:  194 ETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEY 550
            E L + G+ET+L ERKLDN KPCGGAIPLCMV EFDLP +IIDR+V KMKMISPSN+ V+IGQTLK  EYIGM RREVLD +LRERAEK G  VING   K+D+P     PY L+Y ++
Sbjct:   19 EILVKAGIETYLFERKLDNAKPCGGAIPLCMVDEFDLPPEIIDRRVRKMKMISPSNIEVNIGQTLKDDEYIGMCRREVLDGFLRERAEKLGTKVINGTVYKLDIPSKDSDPYTLHYADH 137          
BLAST of CX287429 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 2
Query:  200 LAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHE--YIGMVRREVLDAYLRERAEKNGASVINGLFMKMD 502
            +A+ G++  L++R     KPCGGAIP  ++ +FD+P  ++  K+T  +MISP+   VDI     P E  ++GMV RE  D +LRERA K GA  + G +++++
Sbjct:   21 MARAGLKVALLDRA-GRIKPCGGAIPPRLIRDFDIPDHLLVAKITSARMISPTGRFVDI-----PIENGFVGMVDREDYDEWLRERAGKAGAERLTGTWLRIE 117          
The following BLAST results are available for this feature:
BLAST of CX287429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_ARATH1.972e-6667.89Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_TOBAC9.786e-6667.91Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ4.413e-5064.33Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY33.745e-4167.23Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA2.797e-1239.81Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
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Properties
Property NameValue
Genbank descriptionC01009D11SK Veg1 Citrus clementina cDNA clone C01009D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287429 ID=CX287429; Name=CX287429; organism=Citrus clementina; type=EST; length=555bp
ATCAATGGCTCTCAAATCCTTCACTGGCCTCCGCCAATCACCGCAAGAAC
AACAGCACCCCCACTTCATCGCTCAAGCCCTCCCACGTCAGCAAAAATTC
CGAGTCTCCGCGGCAAAAACCAGTCCAAAACTCACCAACCGCAACCTCCG
AGTGGCGGTCATCGGGGGCGGCCCAGCAGGCGGAGCTGCCGCCGAGACGC
TCGCACAAAATGGCGTCGAAACGTTCCTGATCGAGCGTAAGCTCGACAAC
TGCAAGCCCTGCGGCGGGGCCATCCCTCTCTGCATGGTGGGGGAGTTTGA
CCTGCCGCTGGACATAATCGACCGGAAGGTGACGAAGATGAAGATGATAT
CGCCGTCGAACGTGGCGGTGGACATCGGGCAGACGCTGAAGCCGCACGAG
TATATCGGGATGGTGAGGCGGGAGGTTCTGGACGCGTATTTGAGGGAGAG
GGCGGAGAAGAACGGGGCGAGCGTGATTAACGGGTTATTCATGAAGATGG
ATTTGCCGAGGAACTTTGAGCAGCCGTACGTTTTGTATTATACGGAGTAC
GATGG
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