CX287477

Overview
NameCX287477
Unique NameCX287477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9703 contig Ccv1_Contig9703:132..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287477 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.289e-15
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = -2
Query:  263 RSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 424
            ++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   13 KTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CX287477 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = -2
Query:  260 RSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 424
            +SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:   12 KSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CX287477 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = -2
Query:  266 SQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 421
            SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:   14 SQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CX287477 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = -2
Query:  266 SQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 421
            SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:   14 SQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
The following BLAST results are available for this feature:
BLAST of CX287477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MT3_CARPA2.289e-1562.96Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.063e-1256.36Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE3.420e-1163.46Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV9.951e-1157.69Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
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Properties
Property NameValue
Genbank descriptionC01010A03SK Veg1 Citrus clementina cDNA clone C01010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287477 ID=CX287477; Name=CX287477; organism=Citrus clementina; type=EST; length=425bp
TTTAAAATTAAACCACACAAGGCCACGGTCATGGCCATGGCCATATATTA
CATGATTATGAAGAAGGAAACACAAAACATTACGAGTGATGGGTGACACA
ACACGCACATCACTCCACACACTAGTAGTAGACCATCATAAAAACGAAGT
AGAGAATTTTTCTTTTTTTTTAATCACCCTTACATTATTCTTAACCCCCA
CAATATTTAGGCACACTTGCAGCTTCTTATTTTTTGCTGCATGTGTTTGC
TTATTAGTGACTACCACAAGTGCAGTTCACACAAGCGCAGGTGGGGCCGC
ACTTGCAGTTACCTTCAGTCTCAGCAGCCTGAACGTCCATGACAACAACG
GTGCTGACAAAGCTCAAGTCAGTCTCGACGAAATCAGCAGCATAGCTGCT
TCCCTTCTTCACACACTGGCTCCTG
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