CX287504

Overview
NameCX287504
Unique NameCX287504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15505 contig Ccv1_Contig15505:109..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287504 vs. ExPASy Swiss-Prot
Match: FTRC_SOYBN (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max GN=FTRC PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.524e-59
Identity = 111/148 (75.00%), Postives = 123/148 (83.11%), Query Frame = 1
Query:    4 MTLQSSLCGSGVSTFICTPRPIIARSRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTANM 447
            MT Q+S     V + + TP     R R    +RAQ EPS+KSVEIMRKFSEQYAR+S T+FCVDK VTSVVIKGLADHKD+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECHCMLFLTP+NDFAG +Q+I+LDEIKESTANM
Sbjct:    1 MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGNEQTITLDEIKESTANM 144          
BLAST of CX287504 vs. ExPASy Swiss-Prot
Match: FTRC2_SPIOL (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.060e-57
Identity = 103/122 (84.43%), Postives = 113/122 (92.62%), Query Frame = 1
Query:   82 RPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTANM 447
            RP   I ++VEPS+KSVEIMRKFSEQYAR+S T+FCVDK VTSVVIKGLA+HKDSLGAPLCPCR+YDDKAAEA QGFWNCPCVPMRERKECHCMLFLTPENDFAG+DQ+I LDEI+E TANM
Sbjct:   27 RPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLAEHKDSLGAPLCPCRYYDDKAAEATQGFWNCPCVPMRERKECHCMLFLTPENDFAGKDQTIGLDEIREVTANM 148          
BLAST of CX287504 vs. ExPASy Swiss-Prot
Match: FTRC1_SPIOL (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea GN=FTRC PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 2.612e-56
Identity = 95/117 (81.20%), Postives = 113/117 (96.58%), Query Frame = 1
Query:   97 IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTANM 447
            IRAQ +PS+KS+E+MRKFSEQ+ R+SDT+FCVDKSVT+VVIKGLADH+D+LGAPLCPCRHYDDK AEA+QGFWNCPCVPMRERKECHCMLFLTP+NDFAG++Q+I+LDEI+E T+NM
Sbjct:   28 IRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTAVVIKGLADHRDTLGAPLCPCRHYDDKEAEAKQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKEQTITLDEIREVTSNM 144          
BLAST of CX287504 vs. ExPASy Swiss-Prot
Match: FTRC_MAIZE (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Zea mays GN=FTRC PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.752e-52
Identity = 97/133 (72.93%), Postives = 111/133 (83.46%), Query Frame = 1
Query:   58 PRPIIARSRPVT-QIRAQVE----PSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTA 441
            P     R RP    +RAQ       ++KSVE+MRKFSEQYARRS+TFFC DK+VT+VVIKGLADH+D+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECHCMLFLTP+NDFAG+DQ IS +EIKE+T+
Sbjct:   18 PLSTATRGRPRRCAVRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVIKGLADHRDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKDQVISFEEIKEATS 150          
BLAST of CX287504 vs. ExPASy Swiss-Prot
Match: FTRC_PORYE (Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra yezoensis GN=ftrB PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 5.471e-38
Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 1
Query:  124 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKE 432
            +++E MRKFSE YA+R+ TFFC+D SVT+VVI+GLA HKD  GAPLCPCRHY+DK AE    +WNCPCVPMRER+ECHCMLFLTP+N+FA   Q I    + E
Sbjct:   11 ENLEAMRKFSETYAKRTGTFFCIDSSVTAVVIEGLARHKDQYGAPLCPCRHYEDKKAEISATYWNCPCVPMRERRECHCMLFLTPDNEFASDLQEIDKTTLTE 113          
BLAST of CX287504 vs. ExPASy Swiss-Prot
Match: FTRC_PORPU (Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra purpurea GN=ftrB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 69/106 (65.09%), Postives = 81/106 (76.42%), Query Frame = 1
Query:  127 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTAN 444
            ++E MRKFSE YA+R+ TFFC D SVT+VVI+GLA HKD  GAPLCPCRHY+DK AE    +WNCPCVPMRERKECHCMLFLTP+N+F    Q I    + E  A+
Sbjct:   12 NLEAMRKFSETYAKRTGTFFCADNSVTAVVIEGLARHKDKYGAPLCPCRHYEDKKAEISATYWNCPCVPMRERKECHCMLFLTPDNEFTSDLQEIDKTTLLEKIAS 117          
BLAST of CX287504 vs. ExPASy Swiss-Prot
Match: FTRC_CYACA (Ferredoxin-thioredoxin reductase, catalytic chain OS=Cyanidium caldarium GN=ftrB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.760e-36
Identity = 62/103 (60.19%), Postives = 84/103 (81.55%), Query Frame = 1
Query:  124 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKE 432
            K++E + KF+E YA+ S T+FC+D+S+T++VI+GLA HKD  GAPLCPCRHY++K  E    +WNCPCVPMRERKECHCMLFL P N+F+G+ Q IS D++++
Sbjct:    6 KNLESLHKFAEAYAKLSRTYFCIDQSITALVIEGLARHKDDYGAPLCPCRHYENKKTEVLAAYWNCPCVPMRERKECHCMLFLQPSNEFSGESQLISKDDLQK 108          
BLAST of CX287504 vs. ExPASy Swiss-Prot
Match: FTRC_GUITH (Ferredoxin-thioredoxin reductase, catalytic chain OS=Guillardia theta GN=ftrB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.002e-36
Identity = 63/101 (62.38%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  109 VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSI 411
            +E    S   M+KF+E YA+R++TFFC D S+T +V++GLA HKD  GAPLCPCRHYDDK+ E    +WNCPCVPMRERKECHCMLFLT +N+FAG  Q++
Sbjct:    2 IESYSDSFVAMKKFAETYAKRTNTFFCNDLSITQIVLEGLAKHKDEYGAPLCPCRHYDDKSEEVASTYWNCPCVPMRERKECHCMLFLTKDNEFAGSSQTL 102          
The following BLAST results are available for this feature:
BLAST of CX287504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
FTRC_SOYBN2.524e-5975.00Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC2_SPIOL1.060e-5784.43Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC1_SPIOL2.612e-5681.20Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC_MAIZE1.752e-5272.93Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC_PORYE5.471e-3866.02Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
FTRC_PORPU9.333e-3865.09Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
FTRC_CYACA1.760e-3660.19Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
FTRC_GUITH3.002e-3662.38Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
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Properties
Property NameValue
Genbank descriptionC01010C07SK Veg1 Citrus clementina cDNA clone C01010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287504 ID=CX287504; Name=CX287504; organism=Citrus clementina; type=EST; length=570bp
AACATGACTCTTCAATCCTCTTTGTGCGGCTCCGGCGTTTCGACTTTCAT
CTGCACACCCCGTCCCATAATCGCCCGTTCTCGCCCGGTGACTCAAATTC
GTGCCCAAGTGGAGCCATCGGAGAAGTCAGTTGAGATAATGAGGAAATTC
TCAGAGCAATATGCTAGAAGATCTGACACTTTCTTTTGTGTTGACAAAAG
TGTCACTTCTGTTGTTATTAAGGGATTGGCAGATCATAAAGATTCATTGG
GTGCACCTCTTTGTCCATGTAGGCATTATGACGACAAAGCTGCTGAAGCT
CAGCAGGGCTTCTGGAATTGTCCATGTGTTCCCATGAGAGAGAGGAAGGA
ATGCCACTGCATGCTCTTTCTCACTCCAGAGAACGATTTTGCTGGCCAGG
ATCAGTCCATCTCCTTGGATGAAATCAAGGAATCAACAGCAAATATGTGA
TGTAACTGACTATAATAGGCAAGTTTTACTTGTTTAATCAGTGATCTTTT
GTATTTGGCCAAAAAGAAGAGAAGAGTTATAATGAAGATCATCTCCTGCG
ATGATGAACTCATAACATAG
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