CX287532

Overview
NameCX287532
Unique NameCX287532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287532 vs. ExPASy Swiss-Prot
Match: SCAI_DICDI (Protein SCAI homolog OS=Dictyostelium discoideum GN=scai PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.908e-27
Identity = 57/115 (49.57%), Postives = 87/115 (75.65%), Query Frame = 2 
Query:    8 GEIASRIAQLYFGQYMRTSDMSYLSESYIFYEAILTREYFRD-GLHQHLNLANKQLRFLARFLMVCLVLNRREMVHQLVNQLKMWLDECKRVFQETDFKEWKLVVQEIVRFLKAD 349
            GEIAS+I QLY+  Y+RTSD +YL+ESYIFYEAI  R YF+D  L +  ++  KQLR+ ARF++VCL+LN++++V  L+ +L   +++  ++++ +D +EW LV+QEI  FL+AD
Sbjct:  128 GEIASKIGQLYYHYYLRTSDTNYLNESYIFYEAIRLRSYFKDVSLDKTPDMMVKQLRYYARFIVVCLLLNKKKVVFDLIEELLKHVNDYTKIYKPSDAQEWSLVLQEIFSFLQAD 242
[Close]
BLAST of CX287532 vs. ExPASy Swiss-Prot
Match: SCAI_MOUSE (Protein SCAI OS=Mus musculus GN=Scai PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 5.664e-21
Identity = 50/115 (43.48%), Postives = 74/115 (64.35%), Query Frame = 2 
Query:    8 GEIASRIAQLYFGQYMRTSDMSYLSESYIFYEAILTREYFRD-GLHQHLNLANKQLRFLARFLMVCLVLNRREMVHQLVNQLKMWLDECKRVFQETDFKEWKLVVQEIVRFLKAD 349
            GEIAS+I QLY+  Y+RTS+ SYL+E++ FY AI  R Y+          L  K+LR+ ARF++VCL+LN+ ++V  LV +L   +++    F   D  EW LV+QE+  F++AD
Sbjct:  124 GEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEAD 238
[Close]
BLAST of CX287532 vs. ExPASy Swiss-Prot
Match: SCAI_HUMAN (Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 5.664e-21
Identity = 50/115 (43.48%), Postives = 74/115 (64.35%), Query Frame = 2 
Query:    8 GEIASRIAQLYFGQYMRTSDMSYLSESYIFYEAILTREYFRD-GLHQHLNLANKQLRFLARFLMVCLVLNRREMVHQLVNQLKMWLDECKRVFQETDFKEWKLVVQEIVRFLKAD 349
            GEIAS+I QLY+  Y+RTS+ SYL+E++ FY AI  R Y+          L  K+LR+ ARF++VCL+LN+ ++V  LV +L   +++    F   D  EW LV+QE+  F++AD
Sbjct:  124 GEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEAD 238
The following BLAST results are available for this feature:
BLAST of CX287532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SCAI_DICDI6.908e-2749.57Protein SCAI homolog OS=Dictyostelium discoideum G... [more]
SCAI_MOUSE5.664e-2143.48Protein SCAI OS=Mus musculus GN=Scai PE=1 SV=2[more]
SCAI_HUMAN5.664e-2143.48Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2[more]
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Properties
Property NameValue
Genbank descriptionC01010F01SK Veg1 Citrus clementina cDNA clone C01010F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287532 ID=CX287532; Name=CX287532; organism=Citrus clementina; type=EST; length=448bp
CACGAGGGGAGAGATTGCCTCCAGGATTGCTCAGCTTTATTTTGGACAAT
ATATGCGGACAAGTGATATGAGTTATTTGTCTGAGTCGTATATCTTCTAT
GAAGCGATATTGACGCGGGAGTATTTCAGAGATGGATTGCATCAGCATCT
CAATTTGGCCAACAAACAGTTGAGATTTCTTGCTAGGTTTTTGATGGTTT
GTTTAGTTTTGAACCGACGTGAAATGGTGCATCAGCTGGTTAACCAGCTG
AAAATGTGGCTTGATGAATGCAAAAGGGTGTTTCAGGAAACTGACTTTAA
GGAATGGAAGCTGGTGGTTCAGGAAATAGTTAGGTTTTTGAAAGCTGACA
CGGCTTTTATGAATATCAGGCCTTTAAGATATAGCCTTGTACTGGATCCC
CGTCCAGATGATCTGCCACATGTTTCTGCATCTGTGAGAAGTTTAAAA
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