CX287544

Overview
NameCX287544
Unique NameCX287544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14593 contig Ccv1_Contig14593:54..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX287544 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.818e-49
Identity = 93/119 (78.15%), Postives = 103/119 (86.55%), Query Frame = 1 
Query:   58 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDPNDGT 414
            MA+EICVKAAVGAPD LGDCPFSQRALLTLEEK + YK HLIN+SDKPQWFL+ISP+GKVPV+K DDKWV DSDVIV I+EEKYP+P L  P EFASVGS IF +F  FLKSKD NDG+
Sbjct:    1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGS 119
The following BLAST results are available for this feature:
BLAST of CX287544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DHAR1_ARATH1.818e-4978.15Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
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Properties
Property NameValue
Genbank descriptionC01010G01SK Veg1 Citrus clementina cDNA clone C01010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287544 ID=CX287544; Name=CX287544; organism=Citrus clementina; type=EST; length=414bp
GCAGGAATTCGGCACGAGGGCAACATACACTCTCTCTGATCACTCAATTC
CGCAAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGGCGCTCCTG
ATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTACTTTGGAG
GAAAAGAAAGTTCCATACAAGCGTCACCTCATCAATATCAGTGACAAGCC
TCAATGGTTTTTGGAGATAAGCCCAGAAGGGAAAGTACCTGTGGTAAAGT
TTGATGACAAGTGGGTGGCTGACTCTGATGTGATTGTTAGAATTATTGAG
GAGAAGTATCCTGAGCCTTCTCTTACTAATCCTCCTGAATTTGCCTCTGT
TGGATCAAAGATATTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGGACC
CAAATGATGGGACA
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