CX287550

Overview
NameCX287550
Unique NameCX287550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287550_ssr69 microsatellite CX287550_ssr69:69..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14507 contig Ccv1_Contig14507:39..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287550 vs. ExPASy Swiss-Prot
Match: RK13_ARATH (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.995e-38
Identity = 82/155 (52.90%), Postives = 102/155 (65.81%), Query Frame = 3 
Query:   15 MATLCTPTCVIFXXXXXXXXXXXFKTLNTGTTISSSTTPFLGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAY 452
            MA LC+ + VI              + +  ++ S   +PFLGFS+ +    S       N+KR  +V+C        SLVP NQRWMF++ E NGPDIWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA+
Sbjct:    1 MAVLCSSSTVIL------------SSSSVKSSGSERKSPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAF 143
[Close]
BLAST of CX287550 vs. ExPASy Swiss-Prot
Match: RK13_SPIOL (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.069e-31
Identity = 70/124 (56.45%), Postives = 86/124 (69.35%), Query Frame = 3 
Query:  105 TTISSSTTPFLGFSVA-SAKSTSPLNTK-----RSFKVRCCQNLSL--VPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAY 452
            T + S   P +  +VA SA+ ++  +TK     R  K    +  ++  VP +QRWMF   E  GPDIWN TWYPK+ADH  +DK WYVVDATD ILGR+ASTIAIHIRGKNLA+YTPSVDMGA+
Sbjct:   29 TPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAF 152
The following BLAST results are available for this feature:
BLAST of CX287550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK13_ARATH3.995e-3852.9050S ribosomal protein L13, chloroplastic OS=Arabid... [more]
RK13_SPIOL8.069e-3156.4550S ribosomal protein L13, chloroplastic OS=Spinac... [more]
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Properties
Property NameValue
Genbank descriptionC01010G07SK Veg1 Citrus clementina cDNA clone C01010G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287550 ID=CX287550; Name=CX287550; organism=Citrus clementina; type=EST; length=452bp
AAGAAACCAAAAAAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTC
TCATCATTACAATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACAC
AGGCACTACCATCAGTTCTAGCACAACCCCATTCCTCGGGTTCTCTGTTG
CTTCAGCGAAATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTT
CGCTGCTGCCAGAACCTCTCTCTTGTCCCCGACAACCAACGATGGATGTT
CGAGCAGTCCGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATC
CAAAAGCTGCTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGAT
GCAACCGATAAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATAT
TCGTGGAAAGAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCAT
AT
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