CX287558

Overview
NameCX287558
Unique NameCX287558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15206 contig Ccv1_Contig15206:356..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287558 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.922e-15
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   28 DSMDELGHIRNSNFWLTMGDVQTWVSAALTYEDTCVDGLQGRPLNGYTKTMIRRHILKVAHLTSNALALINSYAA 252
            D M  L H + ++F   M +V+TWVSAALT E TC+DG  G+ ++G  K  +R  ++ VA +TSNALAL+N++AA
Sbjct:  115 DEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAA 189
The following BLAST results are available for this feature:
BLAST of CX287558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA7.922e-1548.0021 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC01010H04SK Veg1 Citrus clementina cDNA clone C01010H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287558 ID=CX287558; Name=CX287558; organism=Citrus clementina; type=EST; length=447bp
AGGAATTCGGCACGAGGTGAGCTCCAAGATTCTATGGACGAACTGGGTCA
CATCAGGAACTCGAATTTTTGGCTCACAATGGGTGATGTCCAAACATGGG
TAAGCGCAGCGTTAACGTATGAAGATACTTGCGTGGATGGGCTTCAAGGT
AGGCCCTTGAACGGATATACGAAGACGATGATCAGGAGGCATATTCTTAA
AGTTGCACATTTGACGAGCAACGCCTTGGCTCTCATAAATAGTTATGCCG
CTGGCAGTAACCCTCCATCTCCCTAAAGGGATCGGATCAAAGCCATTCTA
AATCACTAATTAGAAACGCTCTTTCATGCTACTTCATATAGCGTTGTCCT
GTATATTTTCGTATCTTTAATTTGTGTCAGACTCAAGAGTGTCGGTCGGT
TTTAATTATCCTATTTCTTTGAGATATATTTACATGTGTATAGGACA
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