CX287563

Overview
NameCX287563
Unique NameCX287563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length382
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287563 vs. ExPASy Swiss-Prot
Match: YJBQ_ECOLI (UPF0047 protein yjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.062e-13
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  157 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPE 375
            W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR D E F  + VP+
Sbjct:    2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVRHDMERFFLRTVPD 73
[Close]
BLAST of CX287563 vs. ExPASy Swiss-Prot
Match: YJBQ_ECO57 (UPF0047 protein yjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.062e-13
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  157 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPE 375
            W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR D E F  + VP+
Sbjct:    2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVRHDMERFFLRTVPD 73
[Close]
BLAST of CX287563 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTY (UPF0047 protein yjbQ OS=Salmonella typhimurium GN=yjbQ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  157 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPE 375
            W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR D E    K VP+
Sbjct:    2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVRADMERHFLKTVPD 73
[Close]
BLAST of CX287563 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTI (UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  157 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPE 375
            W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR D E    K VP+
Sbjct:    2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVRADMERHFLKTVPD 73
The following BLAST results are available for this feature:
BLAST of CX287563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YJBQ_ECOLI8.062e-1350.68UPF0047 protein yjbQ OS=Escherichia coli (strain K... [more]
YJBQ_ECO578.062e-1350.68UPF0047 protein yjbQ OS=Escherichia coli O157:H7 G... [more]
YJBQ_SALTY1.520e-1150.68UPF0047 protein yjbQ OS=Salmonella typhimurium GN=... [more]
YJBQ_SALTI1.520e-1150.68UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ P... [more]
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Properties
Property NameValue
Genbank descriptionC01010H09SK Veg1 Citrus clementina cDNA clone C01010H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287563 ID=CX287563; Name=CX287563; organism=Citrus clementina; type=EST; length=382bp
GCCTCCGCTTTGTTTTCAGCTGTACAGGTGAAGCCACCGTCATCGCCACC
GGTTCGTGTAAAAGCCCTGTTCACAAAAAATCCGGGCTCGGGCACCCTAA
AAAATTCCAATTCCAATACCAATCCCAATCCCAATCCCATGGCTTCTAAT
CCTAGGTGGGCACAGAAGACTGTAACTCTCCCTCCACTTCGCCGTGGCTG
TCATCTCATTACCCCTAAGATAGTGAAGGAAATCGCGCAAGACTTGTCAG
AATTCAAGTGTGGCCTTGCGCATCTCTTTTTGCTGCACACAAGTGCCTCT
CTTACTATTAATGAGAATTATGACTCTGATGTTCGGGATGACACCGAGAC
TTTCCTCAACAAAATAGTCCCAGAGGGGAGAT
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