CX287564

Overview
NameCX287564
Unique NameCX287564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length391
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287564 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.771e-20
Identity = 63/123 (51.22%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   34 MESRVLSRAXXXXXX--ISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGE--AAPVRFFDRYPALVTGFFFFMWYF 390
            MESRVLSRA        ++ L R PL N    S  S+K  G+V +GGN++WGRQLRP L        A L       LRP  ATA     G+DSAGE   APV FF RYPAL TGFFFF WYF
Sbjct:    1 MESRVLSRATTLSSLPTLNKLHRLPLAN---ASLPSVKSFGSVSDGGNLVWGRQLRPELCSPVLKKGASL-------LRPCPATAG----GNDSAGEEKVAPVGFFSRYPALTTGFFFFTWYF 109          
BLAST of CX287564 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.153e-20
Identity = 56/121 (46.28%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   34 MESRVLSRAXXXXXXISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAG--KKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYF 390
            MESRVLS        I  L R               P      GGN++WGRQLRP+LL    ++P  L     K+++L+P  ATAS      DSAG+AAPV FF +YP LVTGFFFFMWYF
Sbjct:    1 MESRVLSSGATTISGIPRLTRPAGRTTTTTVVAVASPAKLNTNGGNLVWGRQLRPSLLNLDHSSPVSLVTKPVKRDVLKPCTATAS------DSAGDAAPVGFFAKYPFLVTGFFFFMWYF 115          
BLAST of CX287564 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.441e-19
Identity = 55/121 (45.45%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   34 MESRVLSRAXXXXXXISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAG--KKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYF 390
            MESRVLS        +  L + P       +     P      GGNV+WGRQLRP+LL    ++P  L     K+++L+P  ATAS      DSAG+AAPV F  +YP LVTGFFFFMWYF
Sbjct:    1 MESRVLSSGATAISGVPRLTK-PAGRITTTTVAVAFPARLNATGGNVVWGRQLRPSLLNLDHSSPVSLVTKPVKRDVLKPCSATAS------DSAGDAAPVGFLAKYPFLVTGFFFFMWYF 114          
BLAST of CX287564 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.828e-18
Identity = 59/125 (47.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   34 MESRVLSRAXXXXXXISSLRRSPLENHQNVSFIS------LKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYF 390
            MESRVL RA      +  LRR     ++  S  S       KPIG++GEGGN+I GRQLRP LLL+S          K+EIL+P+ A +   AEG DSAGE   V F  +YP LVTG    MWYF
Sbjct:    1 MESRVLLRATETVTGVPQLRRPIRAINRQFSTASSSFTAFAKPIGSIGEGGNLISGRQLRPLLLLDS-------LPEKREILKPVRAAS---AEGGDSAGE-TKVGFLGKYPWLVTGILLLMWYF 114          
BLAST of CX287564 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.006e-15
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  130 ISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYF 390
            ++ KP+G +  G N+IWGRQLRPA+LLE+S         K+E ++P  A ASS A  SDS+G+ A V FF++   L TGFFFFMWYF
Sbjct:   45 VTAKPVGPLIAGPNLIWGRQLRPAILLETS--------PKRESIKPCSAAASSSAGSSDSSGD-AKVGFFNK-ATLTTGFFFFMWYF 121          
BLAST of CX287564 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.313e-15
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  133 SLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYF 390
            ++K   AV +   ++WGRQLRPALLL ++  P+ L   ++  L+P       PA  ++SAGEA  V F ++YPALVTGFFFFMWYF
Sbjct:   40 TVKCAAAVPDAAPIVWGRQLRPALLLPAALLPS-LQPARRHTLQP-------PAAAAESAGEAKSVGFLEKYPALVTGFFFFMWYF 117          
BLAST of CX287564 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.518e-14
Identity = 50/123 (40.65%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   34 MESRVLSRAXXXXXXISSLRRSPLENHQNVSF---ISLK-PIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYF 390
            MESRVLSR       I++L +    + +  SF     +K P+G V +GG++ WGRQLRP LLLE      G    ++E       TA  P   +  +   A   F ++YPALVTG FFFMWYF
Sbjct:    1 MESRVLSRTTA----IAALPKLFRPSREAASFGFATGVKTPVGLVKDGGSLTWGRQLRPVLLLEP--VQTGPVCSRRE------KTAVQPCRAASGSSGEAKTGFLEKYPALVTGSFFFMWYF 111          
The following BLAST results are available for this feature:
BLAST of CX287564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TPT_PEA1.771e-2051.22Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLAPR5.153e-2046.28Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR7.441e-1945.45Triose phosphate/phosphate translocator, chloropla... [more]
TPT1_BRAOB2.828e-1847.20Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU1.006e-1551.72Triose phosphate/phosphate translocator, chloropla... [more]
TPT_MAIZE1.313e-1548.84Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SPIOL5.518e-1440.65Triose phosphate/phosphate translocator, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionC01010H10SK Veg1 Citrus clementina cDNA clone C01010H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287564 ID=CX287564; Name=CX287564; organism=Citrus clementina; type=EST; length=391bp
TTCTCTCTCAAAAGTAGCCACAGCGGTGACACGATGGAGTCGCGAGTGCT
GTCACGCGCCACCACCACCACCACCACCATTTCAAGCCTCCGAAGATCGC
CGCTTGAGAACCACCAAAACGTCAGCTTCATCTCGTTGAAGCCGATTGGA
GCCGTTGGTGAAGGCGGGAATGTCATTTGGGGAAGACAGCTACGTCCTGC
TCTGCTCCTCGAGAGCTCCAATGCTCCGGCTGGTCTTTTCGCCGGAAAGA
AGGAGATTCTCCGTCCAATCCTCGCCACCGCTTCTTCTCCTGCCGAAGGA
AGCGATTCCGCCGGAGAAGCTGCTCCGGTCAGATTCTTTGACAGGTATCC
GGCCCTCGTGACCGGGTTCTTCTTCTTCATGTGGTACTTCC
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