CX287566

Overview
NameCX287566
Unique NameCX287566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15284 contig Ccv1_Contig15284:8..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287566 vs. ExPASy Swiss-Prot
Match: ADS3_ARATH (Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.238e-44
Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 2
Query:  284 YGRILLSDVLVKRRRSL-FSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQ 628
            Y RI+LSDVLVK++  + +  R W ++D     VVL+MHLL+L APF F W ++ VAFGLY+VTGLLGITLSFHRNLSH++FKLPKWLEYLFAYCG Q+LQGNPIDWVSTHRYHHQ
Sbjct:   75 YRRIMLSDVLVKKKEKVVWWEREWKAMDFGAVAVVLSMHLLSLLAPFQFNWRAVSVAFGLYIVTGLLGITLSFHRNLSHKAFKLPKWLEYLFAYCGAQALQGNPIDWVSTHRYHHQ 190          
BLAST of CX287566 vs. ExPASy Swiss-Prot
Match: ADS1_ARATH (Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis thaliana GN=ADS1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 64/104 (61.54%), Postives = 81/104 (77.88%), Query Frame = 2
Query:  317 KRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQ 628
            +++R+++  R W  LDI  A   L +H L L APF FTW +LRVA  +Y V GL GIT+S+HRNL+HRSFK+PKWLEY FAYCG+ ++QG+PIDWVSTHRYHHQ
Sbjct:   24 RKKRAMWE-RKWKRLDIVKAFASLFVHFLCLLAPFNFTWPALRVALIVYTVGGL-GITVSYHRNLAHRSFKVPKWLEYFFAYCGLLAIQGDPIDWVSTHRYHHQ 125          
BLAST of CX287566 vs. ExPASy Swiss-Prot
Match: ADS2_ARATH (Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis thaliana GN=ADS2 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 63/104 (60.58%), Postives = 76/104 (73.08%), Query Frame = 2
Query:  317 KRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQ 628
            K+RR +F  R W  LD         +H LAL APF FTWS+L V F  Y + GL GIT+S+HRNL+HRSFK+PKWLEYL AYC + ++QG+PIDWVSTHRYHHQ
Sbjct:   25 KKRRWVFWDRRWRRLDYVKFSASFTVHSLALLAPFYFTWSALWVTFLFYTIGGL-GITVSYHRNLAHRSFKVPKWLEYLLAYCALLAIQGDPIDWVSTHRYHHQ 127          
BLAST of CX287566 vs. ExPASy Swiss-Prot
Match: ADS32_ARATH (Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana GN=ADS3.2 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.469e-29
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 2
Query:  290 RILLSDVLVKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQ 628
            R LLS+V+V R +  F  R+W S D+S   + +  HLL+L APF F+W +  V   L  + G+  ITLS+HRNLSHRSF LPKWLEYLFAY GV + QG+PI+WVS HRYHH+
Sbjct:   71 RRLLSEVVVVRTKRSFWERSWTSWDVSKLVIFVGTHLLSLLAPFYFSWEAFWVFPWLVFINGIC-ITLSYHRNLSHRSFDLPKWLEYLFAYGGVLAFQGDPIEWVSNHRYHHK 182          
BLAST of CX287566 vs. ExPASy Swiss-Prot
Match: ADSL1_ARATH (Delta-9 desaturase-like 1 protein OS=Arabidopsis thaliana GN=At1g06090 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.619e-28
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  314 VKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQ 628
            V+  +  F  R W  +DI+ A  V A+HLL L APF + W +LR    L +VT L  IT S+HRNL+H+SFKLPKWLEY FAY  + +LQG+PIDWVSTHR+HHQ
Sbjct:   16 VRGEKRAFFFRKWTRIDIARASAVGAVHLLCLLAPFNYKWEALRFGVILAIVTSL-SITFSYHRNLTHKSFKLPKWLEYPFAYSALFALQGHPIDWVSTHRFHHQ 119          
BLAST of CX287566 vs. ExPASy Swiss-Prot
Match: ADSL3_ARATH (Delta-9 desaturase-like 3 protein OS=Arabidopsis thaliana GN=At1g06120 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.375e-27
Identity = 57/105 (54.29%), Postives = 73/105 (69.52%), Query Frame = 2
Query:  314 VKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQ 628
            V++ +  F  R W  +D+     V A+HLL L APF +TW + R A  + + T L  IT S+HRNL+HRSFKLPKWLEY FAY  + +LQG+PIDWVSTHR+HHQ
Sbjct:   16 VRKEKRAFLFRKWTRVDVMRVSAVGAVHLLCLLAPFNYTWEAFRFAAMVGISTNL-SITFSYHRNLTHRSFKLPKWLEYPFAYSALFALQGHPIDWVSTHRFHHQ 119          
BLAST of CX287566 vs. ExPASy Swiss-Prot
Match: ADSL4_ARATH (Delta-9 desaturase-like 4 protein OS=Arabidopsis thaliana GN=At1g06350 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.824e-27
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 2
Query:  308 VLVKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQ 628
            V   ++R+ F  R W  +D+  A VV+ +H L L APF F W +LR    L+ +T  L IT SFHRNLSHRSFK+PKWLEY +AY  V +LQG+P+DWVS HR+HHQ
Sbjct:   16 VSTMQKRAYFQ-RQWPLVDVVRASVVVIVHFLCLLAPFNFKWEALRFGLVLFALT-TLSITFSFHRNLSHRSFKIPKWLEYPWAYSAVFALQGDPMDWVSIHRFHHQ 120          
BLAST of CX287566 vs. ExPASy Swiss-Prot
Match: ADSL5_ARATH (Delta-9 desaturase-like 5 protein OS=Arabidopsis thaliana GN=At1g06360 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.986e-26
Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 2
Query:  314 VKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQ 628
            V + +  +  R W+  DI  A  V+ +H L L APF + W +LR  F LY +T L  IT S+HRNL+HRSFKLPKWLEY  AY  V +LQG+P+DWVS HR+HHQ
Sbjct:   16 VSKEKRPYIHREWSWADIIRALTVINVHFLCLLAPFNYKWEALRFGFVLYALTSL-SITFSYHRNLAHRSFKLPKWLEYPLAYFAVFALQGDPLDWVSIHRFHHQ 119          
BLAST of CX287566 vs. ExPASy Swiss-Prot
Match: ADSL2_ARATH (Delta-9 desaturase-like 2 protein OS=Arabidopsis thaliana GN=At1g06100 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.423e-26
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 2
Query:  314 VKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQ 628
            V++ +  +  R W   D+  A  V  +HLL L APF + W + R    L ++T L  IT S+HRNL+HRSFKLPKWLEY FAY  + +LQG+P+DWVS HR+HHQ
Sbjct:   16 VRKEKRAYVLRKWTQFDVGRASTVGTVHLLCLLAPFNYKWEAFRFGIILAILTNLC-ITFSYHRNLTHRSFKLPKWLEYPFAYSALLALQGDPLDWVSIHRFHHQ 119          
The following BLAST results are available for this feature:
BLAST of CX287566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ADS3_ARATH1.238e-4470.69Palmitoyl-monogalactosyldiacylglycerol delta-7 des... [more]
ADS1_ARATH3.163e-3261.54Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis tha... [more]
ADS2_ARATH9.202e-3260.58Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis tha... [more]
ADS32_ARATH1.469e-2955.75Probable lipid desaturase ADS3.2, chloroplastic OS... [more]
ADSL1_ARATH3.619e-2856.19Delta-9 desaturase-like 1 protein OS=Arabidopsis t... [more]
ADSL3_ARATH1.375e-2754.29Delta-9 desaturase-like 3 protein OS=Arabidopsis t... [more]
ADSL4_ARATH6.824e-2754.21Delta-9 desaturase-like 4 protein OS=Arabidopsis t... [more]
ADSL5_ARATH1.986e-2653.33Delta-9 desaturase-like 5 protein OS=Arabidopsis t... [more]
ADSL2_ARATH4.423e-2650.48Delta-9 desaturase-like 2 protein OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC01011A01SK Veg1 Citrus clementina cDNA clone C01011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287566 ID=CX287566; Name=CX287566; organism=Citrus clementina; type=EST; length=630bp
CACGAGGGGAAAGCCTTTCTCCATGGCTTTCATCACAACATCACCAACCA
AACCAAAATCTTTCACTTTTTCACCTCTGTGTCAAGCAAGAAAAACTCAA
ACCGATAAAGTTCTGGCCTTCGGCAATTCTAACTTACAACACAAGCTAAT
AAAAACGAGCTTTGTGTATCATGTTTATAAATATAACAAAAGAGAGTCAC
TAGCAATTGTTAATGCAGCATCAATTGAATCGACAGAACCAAAGCCAGAG
CCAGAGCCAGAGCAAATTCCCGAGGTGGAAACTTATGGGAGAATTTTGTT
ATCTGATGTGTTGGTGAAGAGGAGAAGAAGTTTATTTTCTGGGAGGAATT
GGAACTCATTGGATATAAGCACAGCTGGTGTTGTTTTGGCAATGCATTTG
CTTGCTCTCTTTGCGCCATTTTGTTTCACGTGGAGTTCTCTTAGGGTTGC
TTTTGGACTTTATGTTGTGACTGGACTTCTGGGTATCACTCTTTCTTTTC
ACAGAAACCTTTCTCATAGGAGTTTTAAATTACCCAAATGGCTTGAGTAC
TTGTTTGCTTATTGCGGAGTTCAGTCTCTTCAGGGGAATCCAATTGATTG
GGTAAGCACACATAGGTATCATCACCAGTT
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