CX287579

Overview
NameCX287579
Unique NameCX287579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287579 vs. ExPASy Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.746e-28
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = -3
Query:  358 MPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 549
            MPCRSKGDGDYELVKDVIFDDYLR+++AKTE ELLAEKKCVAHLTGEGIA CDLP DTMLPGEM
Sbjct:  374 MPCRSKGDGDYELVKDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM 437          
BLAST of CX287579 vs. ExPASy Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.043e-27
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = -3
Query:  358 MPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 549
            MPCRSKGDGDYELV DVIFDDYLR+++AKTE ELLAEKKCVAHLTGEGIA CDLP DTMLPGEM
Sbjct:  378 MPCRSKGDGDYELVNDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM 441          
BLAST of CX287579 vs. ExPASy Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.043e-27
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = -3
Query:  358 MPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 549
            MPCRSKGDGDYE VKDVIFDDYL K+I K+E ELLAEKKCVAHLTGEGIA CDLPEDTMLPGEM
Sbjct:  390 MPCRSKGDGDYEFVKDVIFDDYLSKKIKKSEDELLAEKKCVAHLTGEGIAVCDLPEDTMLPGEM 453          
BLAST of CX287579 vs. ExPASy Swiss-Prot
Match: MDHP_SPIOL (Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.478e-26
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = -3
Query:  358 MPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPE-DTMLPGEM 549
            MPCRSKGDGDYELVKDVIFDDYLRKRI  +E+ELLAEK+C AHLTGEGIA CDLP  DTMLPGEM
Sbjct:  371 MPCRSKGDGDYELVKDVIFDDYLRKRIKTSEEELLAEKRCTAHLTGEGIAVCDLPAGDTMLPGEM 435          
BLAST of CX287579 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.478e-26
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = -3
Query:  358 MPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPE-DTMLPGEM 549
            MPCRSKGDGDYELVKDV+FDDYLR+RI K+E+ELLAEK+C AHLTGEG+A CDLP  DTMLPGEM
Sbjct:  377 MPCRSKGDGDYELVKDVVFDDYLRQRIKKSEEELLAEKRCTAHLTGEGVAVCDLPAGDTMLPGEM 441          
BLAST of CX287579 vs. ExPASy Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.268e-25
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  358 MPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 549
            MPCRSKGDGDYEL  DV+ DD+L +RI K+E ELLAEKKCVAHLTGEG AFCDLPEDTMLPGE+
Sbjct:  369 MPCRSKGDGDYELASDVLMDDFLWERIKKSEAELLAEKKCVAHLTGEGNAFCDLPEDTMLPGEV 432          
BLAST of CX287579 vs. ExPASy Swiss-Prot
Match: MDHP2_SORBI (Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.103e-24
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = -3
Query:  361 MPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGE 549
            MPCRSKGDGDYEL  DV  DD+L +RI K+E ELLAEKKCVAHLTGEG AFCDLPEDTMLPGE
Sbjct:  369 MPCRSKGDGDYELATDVSMDDFLWERIKKSEAELLAEKKCVAHLTGEGDAFCDLPEDTMLPGE 431          
BLAST of CX287579 vs. ExPASy Swiss-Prot
Match: MDHP1_SORBI (Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.559e-23
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = -3
Query:  358 MPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 549
            MPCRSKGDGDYEL  DV  DD+L +RI K+E ELLAEKKCVAHLTGEG A+CD+PEDTMLPGE+
Sbjct:  366 MPCRSKGDGDYELATDVSMDDFLWERIKKSEAELLAEKKCVAHLTGEGNAYCDVPEDTMLPGEV 429          
The following BLAST results are available for this feature:
BLAST of CX287579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MDHP_MEDSA2.746e-2890.63Malate dehydrogenase [NADP], chloroplastic OS=Medi... [more]
MDHP_PEA1.043e-2789.06Malate dehydrogenase [NADP], chloroplastic OS=Pisu... [more]
MDHP_FLABI1.043e-2789.06Malate dehydrogenase [NADP], chloroplastic OS=Flav... [more]
MDHP_SPIOL7.478e-2686.15Malate dehydrogenase [NADP], chloroplastic OS=Spin... [more]
MDHP_MESCR7.478e-2683.08Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDHP_MAIZE8.268e-2581.25Malate dehydrogenase [NADP], chloroplastic OS=Zea ... [more]
MDHP2_SORBI4.103e-2482.54Malate dehydrogenase [NADP] 2, chloroplastic OS=So... [more]
MDHP1_SORBI1.559e-2378.13Malate dehydrogenase [NADP] 1, chloroplastic OS=So... [more]
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Properties
Property NameValue
Genbank descriptionC01011B02SK Veg1 Citrus clementina cDNA clone C01011B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287579 ID=CX287579; Name=CX287579; organism=Citrus clementina; type=EST; length=551bp
GAATTCGGCACGAGGGTCTCGAGTTTTTTTTTTTTTTTTTTAGAAAAATA
TGATTCACAAATTATCATTCTGTGAGGTACATACTGTGATTATATATAAG
GACAAATAATACAGAATGTCAACGTTCTTATGTGGTGTGGTATATCAGTG
TCGAGTATTCACACATAAGGTAACCACGGCAAAAGCCAAGCCAAGCCAAC
TTGACTGGACACTTCCAATCTCAAATTTCATTAAATGGTTTAATATTGGC
ACGTTATCCTGCACACTCGTAATAAATAGATAGTTCATATTCTGCCTTCT
CACTCTACAGCTTATTGCAGTAGCAGTCATGATTTCCTAGAGCCCTAACC
ACGTTTACATTTCTCCGGGAAGCATCGTGTCCTCTGGTAGATCACAAAAA
GCAATGCCCTCTCCTGTAAGATGGGCCACACATTTCTTCTCAGCTAGCAA
CTCTTGTTCGGTCTTCGCTATCCGCTTGCGAAGGTAGTCATCAAATATTA
CATCCTTGACAAGTTCATAATCACCATCTCCTTTTGATCTGCATGGCATG
C
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