CX287580

Overview
NameCX287580
Unique NameCX287580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287580 vs. ExPASy Swiss-Prot
Match: PHYE_ARATH (Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.813e-13
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = -3 
Query:  376 LIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKT 534
            ++ DM+  R+ W TP+GLGLKLSRKLL  MNGRV YVRE+ +C+F +DL++KT
Sbjct: 1044 MLSDMFETRDGWVTPDGLGLKLSRKLLEQMNGRVSYVREDERCFFQVDLQVKT 1096
[Close]
BLAST of CX287580 vs. ExPASy Swiss-Prot
Match: PHYE_IPONI (Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.999e-13
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = -3 
Query:  373 LIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTR 534
            LIEDM  G  +WTT EG+ L LS+KL+ MMNG V YVRE  KCYF+IDL+ KT+
Sbjct: 1048 LIEDMVRGGTRWTTQEGVVLHLSQKLVRMMNGHVHYVREQQKCYFLIDLDFKTQ 1101
The following BLAST results are available for this feature:
BLAST of CX287580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PHYE_ARATH1.813e-1360.38Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1... [more]
PHYE_IPONI8.999e-1362.96Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC01011B03SK Veg1 Citrus clementina cDNA clone C01011B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287580 ID=CX287580; Name=CX287580; organism=Citrus clementina; type=EST; length=536bp
GCACGAGGTTTTTTTTTTTTTTTTTGACAAAACCGCTTTTGATTTCATTC
ATGATTTTACCAGTGTATATAAAACATTTCCAAAACATGCTTACGTTACG
ACTGCATACTAAGCTGTAAAGCCACAATTACAAAGCTGCTGCAACAGTAA
AGCAAGTGCATGTTAGGAAATACTATTTTGCAAATGAACAGTTTCTAACC
GAACATTTACGTTGATAAAAGAACATGATCTGCTGCAAGACTCAGGCTTC
ACCAGATGCTCCTTTGATGTCCCAGGCCATGCTAGGACAGAATCTAATGG
ACTCGTGTGCATGCAAACAAGAAGAGTGTGGTGATTTAAATTATGCCATT
CTAATTACATCTTTTGTCTTCCTCTAGTTTTGAGTTCAAGGTCGATGACG
AAATAACACTTGCTATTTTCTCTGACATAGCGGACTCGGCCATTCATCAT
GATGAGAAGTTTTCGAGACAGTTTCAACCCTAAACCCTCCGGTGTAGTCC
ACTGATTTCTACCATTATACATATCTTCAATAAGAT
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