CX287581

Overview
NameCX287581
Unique NameCX287581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHYE_ARATH (Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 40/66 (60.61%), Postives = 54/66 (81.82%), Query Frame = -1
Query:  378 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKT 575
            FR+ HPG+G+PS ++ DM+  R+ W TP+GLGLKLSRKLL  MNGRV YVRE+ +C+F +DL++KT
Sbjct: 1031 FRMIHPGKGLPSEMLSDMFETRDGWVTPDGLGLKLSRKLLEQMNGRVSYVREDERCFFQVDLQVKT 1096          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHYE_IPONI (Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = -1
Query:  375 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTR 575
            FR+THPG+G+PS LIEDM  G  +WTT EG+ L LS+KL+ MMNG V YVRE  KCYF+IDL+ KT+
Sbjct: 1035 FRMTHPGQGLPSALIEDMVRGGTRWTTQEGVVLHLSQKLVRMMNGHVHYVREQQKCYFLIDLDFKTQ 1101          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHY_PINSY (Phytochrome OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15
Identity = 35/70 (50.00%), Postives = 54/70 (77.14%), Query Frame = -1
Query:  366 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGRQ 575
            FR+THPG G+P+ L++D+++ R+QW T EG+GL + RKLL +MNG VRY+RE+  CYF++++E     R+
Sbjct: 1057 FRITHPGLGLPAELVQDLFD-RSQWATQEGVGLSMCRKLLKLMNGDVRYIRESGICYFLVNVEFPMAQRE 1125          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHYB_SOYBN (Phytochrome B OS=Glycine max GN=PHYB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.482e-15
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = -1
Query:  369 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGR 575
            FR+  PGEG+P  LI+DM+N  ++W T EGLGL +SRK+L +MNG V+Y+RE  +CYF + LEL    R
Sbjct: 1084 FRMVCPGEGLPPELIQDMFNN-SRWGTQEGLGLSMSRKILKLMNGEVQYIREAERCYFYVLLELPVTRR 1151          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHYB_TOBAC (Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 33/74 (44.59%), Postives = 54/74 (72.97%), Query Frame = -1
Query:  360 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF--VIDLELKTRGRQKM 575
            FR+  PGEG+P  L++DM++  ++W T EGLGL + RK+L +MNG ++Y+RE+ +CYF  ++DL +  RG + +
Sbjct: 1059 FRIVCPGEGLPPELVQDMFHS-SRWVTKEGLGLSMCRKILKLMNGDIQYIRESERCYFLIILDLPMTRRGSKSL 1131          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHYB_ARATH (Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = -1
Query:  384 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 575
            FR+  PGEG+P  L+ DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1087 FRMACPGEGLPPELVRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1149          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHY2_CERPU (Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = -1
Query:  384 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 575
            FR++HPG G+P  L+ +MY+ R +  T EGLGL + RKL+ +MNG V+YVREN++CYFV+ +EL
Sbjct: 1047 FRVSHPGGGLPDELVLEMYD-RAKGMTQEGLGLNMCRKLVRLMNGDVQYVRENAQCYFVVYVEL 1109          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHYB_SOLTU (Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13
Identity = 31/63 (49.21%), Postives = 49/63 (77.78%), Query Frame = -1
Query:  384 RLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 572
            R+  PGEG+P  L++DM++  ++W T EGLGL + RK+L +MNG ++Y+RE+ +CYF+I L+L
Sbjct: 1058 RIICPGEGLPPELVQDMFHS-SRWVTQEGLGLSMCRKMLKLMNGEIQYIRESERCYFLIILDL 1119          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHYB1_SOLLC (Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13
Identity = 31/63 (49.21%), Postives = 49/63 (77.78%), Query Frame = -1
Query:  384 RLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 572
            R+  PGEG+P  L++DM++  ++W T EGLGL + RK+L +MNG ++Y+RE+ +CYF+I L+L
Sbjct: 1059 RIICPGEGLPPELVQDMFHS-SRWVTQEGLGLSMCRKMLKLMNGEIQYIRESERCYFMIILDL 1120          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHYB_SORBI (Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13
Identity = 31/64 (48.44%), Postives = 50/64 (78.12%), Query Frame = -1
Query:  384 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 575
            FR T+PGEG+P+ +++DM++  +QW+T EG+GL   RK+L +M G V+Y+RE+ + +F+I LEL
Sbjct: 1104 FRFTYPGEGLPADIVQDMFSN-SQWSTQEGVGLSTCRKILKLMGGEVQYIRESERSFFLIVLEL 1166          
The following BLAST results are available for this feature:
BLAST of CX287581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PHYE_ARATH1.491e-1960.61Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1... [more]
PHYE_IPONI1.947e-1964.18Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1[more]
PHY_PINSY1.000e-1550.00Phytochrome OS=Pinus sylvestris PE=2 SV=1[more]
PHYB_SOYBN6.482e-1553.62Phytochrome B OS=Glycine max GN=PHYB PE=3 SV=1[more]
PHYB_TOBAC4.201e-1444.59Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV... [more]
PHYB_ARATH4.201e-1453.13Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1... [more]
PHY2_CERPU2.085e-1354.69Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 ... [more]
PHYB_SOLTU2.723e-1349.21Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV... [more]
PHYB1_SOLLC2.723e-1349.21Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE... [more]
PHYB_SORBI6.067e-1348.44Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC01011B04SK Veg1 Citrus clementina cDNA clone C01011B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287581 ID=CX287581; Name=CX287581; organism=Citrus clementina; type=EST; length=575bp
CGGCACGAGGTTTTTTTTTTTTTTTTTGACAAAACCGCTTTTGATTTCAT
TCATGATTTTACCAGTGTATATAAAACATTTCCAAAACATGCTTACGTTA
CGACTGCATACTAAGCTGTAAAGCCACAATTACAAAGCTGCTGCAACAGT
AAAGCAAGTGCATGTTAGGAAATACTATTTTGCAAATGAACAGTTTCTAA
CCGAACATTTACGTTGATAAAAGAACATGATCTGCTGCAAGACTCAGGCT
TCACCAGATGCTCCTTTGATGTCCCAGGCCATGCTAGGACAGAATCTAAT
GGACTCGTGTGCATGCAAACAAGAAGAGTGTGGTGATTTAAATTATGCCA
TTCTAATTACATCTTTTGTCTTCCTCTAGTTTTGAGTTCAAGGTCGATGA
CGAAATAACACTTGCTATTTTCTCTGACATAGCGGACTCGGCCATTCATC
ATGATGAGAAGTTTTCGAGACAGTTTCAACCCTAAACCCTCCGGTGTAGT
CCACTGATTTCTACCATTATACATATCTTCAATAAGATGAGAGGGAATGC
CTTCACCAGGATGAGTCAGTCTGAA
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