CX287583

Overview
NameCX287583
Unique NameCX287583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length605
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287583 vs. ExPASy Swiss-Prot
Match: YAM3_SCHPO (UPF0673 membrane protein C1F5.03c OS=Schizosaccharomyces pombe GN=SPAC1F5.03c PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 37/115 (32.17%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  212 EVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCTD-DGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSP 553
            E+Y+CG   ++ +P+       D     ++K+ A      +  ++ VK  QAC+LP ++  G PVIG++      YV   H CWGI  GP TG  L+EL++DG  +  ++    P
Sbjct:  266 ELYVCGEFDDEPLPELSSDTKVDQDKCALIKQCANHFHQII-RDSPVKVRQACYLPISNATGAPVIGKIGS--SIYVAAAHGCWGITLGPGTGKVLSELILDGAVTSANIDLLDP 377          
BLAST of CX287583 vs. ExPASy Swiss-Prot
Match: YHG9_YEAST (UPF0673 membrane protein YHR009C OS=Saccharomyces cerevisiae GN=YHR009C PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  212 EVYLCG----MSSEQEVPDDPETVSGDPASI-QVLKRVARTVSSHLGEEAQVKAEQACFLPC----TDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSP 553
            EVY+CG    + +  E  DD E VS     +   + +++ T+S     +  +  +QACFLP     T  G P+IGE   +K  Y+ +GH+CWGI N PATG  +AE+++DG A+  ++S   P
Sbjct:  398 EVYVCGEGDTLVNIPESSDDVEVVSEKCDELYHYVSKLSPTLS-----KGHLLRKQACFLPVLNVPTSSG-PLIGET-NVKDLYIASGHSCWGINNAPATGKLMAEILLDGEATSAEISSLDP 513          
The following BLAST results are available for this feature:
BLAST of CX287583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YAM3_SCHPO1.986e-1232.17UPF0673 membrane protein C1F5.03c OS=Schizosacchar... [more]
YHG9_YEAST7.546e-1236.59UPF0673 membrane protein YHR009C OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionC01011B06SK Veg1 Citrus clementina cDNA clone C01011B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287583 ID=CX287583; Name=CX287583; organism=Citrus clementina; type=EST; length=605bp
CTCGTGCCGAATTCGGCACGAGGAAAGTGGAGCAGCAAGTATACATGTGG
AAAGCATGCTGGAGCAAAGTAAAATGGAGCAGGAGCAAAGTGATTTGAAA
TATGAAGCATACATGCTAGCTGCTGTCATGATGGAAGAAAAATATGGAAG
CTTCAAAGACCCACTTTGAGAAAAAGATAAATACAGACTTCGAATAAAAC
TCTTAAGTGGGGAGGTTTACTTGTGTGGGATGTCATCTGAGCAAGAAGTT
CCAGATGATCCAGAAACAGTTTCAGGAGATCCTGCATCTATACAGGTGCT
AAAGAGGGTGGCTAGGACAGTGTCAAGCCATTTAGGGGAAGAGGCACAAG
TGAAGGCAGAGCAAGCATGTTTCCTGCCATGTACTGATGATGGTGTGCCT
GTAATAGGCGAACTTCCAGGTATTAAAGGTTGTTACGTGGGTACTGGGCA
TAATTGCTGGGGTATTCTAAATGGTCCAGCCACTGGGGCTGCTCTGGCTG
AGCTTGTGATGGATGGTTGTGCTAGCATTGTCGATCTTAGTCGCTTTAGT
CCTGCAAGATTCGGTCGGCCGTCGGCGTAGACAAAATCTATAGACATAAT
TTGGT
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