CX287588

Overview
NameCX287588
Unique NameCX287588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287588 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  139 PPAHFLLKIQTFSSLLENKVESYESSEFNVGSHKWKLVLYPNGNKKKKVKDHISLYLAMADSSSFGFGWEVFVIFRLFVHDQNEDTYLIPQDAMGNERRFHGLKLEWGFDQFIPLKEFNDASNGYLVGDT 528
            P   F   I  FS         + S  F VG +KW+++++P GN      DH+S+YL ++D++S  +GW  +  F L V +Q    Y + ++    + +F+  + +WGF  F+PL E  D S GYLV DT
Sbjct:   53 PTLKFTWTIPNFS---RQNTRKHYSDVFVVGGYKWRILIFPKGNNV----DHLSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKET---QHQFNARESDWGFTSFMPLSELYDPSRGYLVNDT 172          
BLAST of CX287588 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 44/130 (33.85%), Postives = 72/130 (55.38%), Query Frame = 1
Query:  139 PPAHFLLKIQTFSSLLENKVESYESSEFNVGSHKWKLVLYPNGNKKKKVKDHISLYLAMADSSSFGFGWEVFVIFRLFVHDQNEDTYLIPQDAMGNERRFHGLKLEWGFDQFIPLKEFNDASNGYLVGDT 528
            P   F   I  F+ L   K   + S  F VG +KW+++++P GN      DH+S+YL +AD+++  +GW  +  F L V +Q  + Y I ++    + +F+  + +WGF  F+PL E  + + GYLV DT
Sbjct:   52 PSLKFTWTIPMFTRLNTRK---HYSDVFVVGGYKWRILIFPKGNNV----DHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKET---QHQFNARESDWGFTSFMPLSELYEPTRGYLVNDT 171          
The following BLAST results are available for this feature:
BLAST of CX287588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP12_ARATH3.020e-1633.85Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP13_ARATH1.957e-1533.85Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC01011B11SK Veg1 Citrus clementina cDNA clone C01011B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287588 ID=CX287588; Name=CX287588; organism=Citrus clementina; type=EST; length=540bp
GATAACTCTAACCCTTAAAAAATCTTATTCTAATCAATCTTTCTTCTATA
CTCTTTTTAGTACTTGAAGAGTTATAGTAGTTTGAAGGAATTTGTTGCAA
TGGAAAATCAAGTTGTTTCAATATCCATTTCACATGTACCACCGGCTCAT
TTCCTACTCAAAATACAGACATTTTCGTCCCTTCTAGAAAATAAAGTGGA
AAGTTATGAATCTTCGGAATTTAATGTTGGAAGCCACAAATGGAAACTTG
TTTTGTACCCAAATGGAAATAAAAAAAAAAAGGTGAAAGATCACATCTCA
CTCTACTTGGCAATGGCAGACTCAAGTTCTTTTGGTTTCGGTTGGGAAGT
CTTTGTGATTTTTCGCCTGTTTGTGCATGATCAGAACGAAGACACGTACT
TGATTCCTCAAGATGCAATGGGAAATGAAAGACGTTTTCATGGGTTGAAG
CTTGAATGGGGTTTTGATCAATTCATCCCGCTTAAAGAATTTAACGATGC
GTCAAATGGATATCTTGTGGGAGATACATGTGTTTTTGGA
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