CX287590

Overview
NameCX287590
Unique NameCX287590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO_DICDI (Protein slowmo homolog OS=Dictyostelium discoideum GN=slmo PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.257e-23
Identity = 58/165 (35.15%), Postives = 94/165 (56.97%), Query Frame = 1
Query:   82 TQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVME 576
            T +H YKH W   ++AS+RK+  PE       IL +D L+ ++DP +G L  T+ +      P +++ I+G   C   E T VD ++K M L T+N++    + V+E   YE HPDN   WT+  QE ++     S++  +A K+E  C ++F+ N+ KGR++ME
Sbjct:    6 TIKHTYKHLWSDASTASFRKYPSPERP----DILSIDILSKEIDPTTGVLKCTKLIICKGNTPSWLKSILGSGECLFYEETTVDPKNKIMTLKTKNLNFTNILGVDEVCTYEQHPDNEE-WTLFTQEATV----TSSIFGVARKMEAFCLDRFVANAGKGRKIME 161          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO2_HUMAN (Protein slowmo homolog 2 OS=Homo sapiens GN=SLMO2 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.496e-22
Identity = 64/180 (35.56%), Postives = 102/180 (56.67%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 603
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ +IG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PHP +P   TV  QE  I +K +    S++  +E   A     N+ KGRE ME +   L AE
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEK-TVLTQEAIITVKGV----SLSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 170          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO2_CRIGR (Protein slowmo homolog 2 OS=Cricetulus griseus GN=SLMO2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.496e-22
Identity = 64/180 (35.56%), Postives = 102/180 (56.67%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 603
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ +IG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PHP +P   TV  QE  I +K +    S++  +E   A     N+ KGRE ME +   L AE
Sbjct:    1 MKIWTSEHVFDHPWEMVTTAAMQKYPNPMNPS----VVGVDVLDRHVDP-SGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVKKTMELKSTNISFTNMVSVDERLTYKPHPQDPEK-TVLTQEAIITVKGV----SLSSYLEGLMASTISSNANKGREAMEWVIHKLNAE 170          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO2_MACFA (Protein slowmo homolog 2 OS=Macaca fascicularis GN=SLMO2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.259e-22
Identity = 63/180 (35.00%), Postives = 102/180 (56.67%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 603
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ +IG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PHP +P   T+  QE  I +K +    S++  +E   A     N+ KGRE ME +   L AE
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPDK-TILTQEAIITVKGV----SLSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 170          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO2_BOVIN (Protein slowmo homolog 2 OS=Bos taurus GN=SLMO2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.259e-22
Identity = 64/180 (35.56%), Postives = 101/180 (56.11%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 603
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ IIG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PHP +P   T+  QE  I +K +    S+   +E   A     N+ KGRE ME +   L AE
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLLSTEWGLPSIVKSIIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEK-TILTQEAIITVKGV----SLGSYLEGLMASTISSNANKGREAMEWVIHKLNAE 170          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO2_RAT (Protein slowmo homolog 2 OS=Rattus norvegicus GN=Slmo2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.483e-22
Identity = 63/180 (35.00%), Postives = 102/180 (56.67%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 603
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ +IG  +   +  E +VVD   ++M+L + N+S    + V+E++ Y+PHP +P   TV  QE  I +K +    S++  +E   A     N+ KGRE ME +   L AE
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHVDP-SGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPIRRTMELKSTNISFTNMVSVDERLTYKPHPQDPEK-TVLTQEALITVKGV----SLSSYLEGLMASTISSNANKGREAMEWVIHKLNAE 170          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO2_MOUSE (Protein slowmo homolog 2 OS=Mus musculus GN=Slmo2 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21
Identity = 62/180 (34.44%), Postives = 102/180 (56.67%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 603
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ +IG  +   +  E +VVD  +++M+L + N+S    + V+E++ Y+PH  +P   TV  QE  I +K +    S++  +E   A     N+ KGRE ME +   L AE
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHVDP-SGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVTRTMELKSTNISFTNMVSVDERLTYKPHLQDPEK-TVLTQEALITVKGV----SLSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 170          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO2_PIG (Protein slowmo homolog 2 OS=Sus scrofa GN=SLMO2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.369e-20
Identity = 63/180 (35.00%), Postives = 101/180 (56.11%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 603
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +D  SGKL++ R L+     P  V+ IIG  +   +  E +VVD  +K+M+L + N+S    + V+E++ Y+PHP + +  TV  QE  I +K +    S+   +E   A     N+ KGRE ME +   L AE
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHID-ASGKLHSHRLLSTEWGLPSIVKSIIGAARTKTYVQEHSVVDPVAKTMELKSTNISFTNMVSVDERLIYKPHPQD-SEKTVLTQEAIITVKGV----SLGSYLEGLMASTISSNANKGREAMEWVIHKLNAE 170          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO1_HUMAN (Protein slowmo homolog 1 OS=Homo sapiens GN=SLMO1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.813e-19
Identity = 58/179 (32.40%), Postives = 96/179 (53.63%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEA 600
            +K ++ EH++ HPW+ V  A+ RK+ +P N      +L VD L  ++D   G+L++ R L+     P  VR I+G  + + +  E +VVD   K M+L + N++L   + V E++ Y PHP+NP   TV  QE  I +K +    S+   +E   A     N+ KG   +E I ++ E+
Sbjct:    1 MKIWSSEHVFGHPWDTVIQAAMRKYPNPMNPS----VLGVDVLQRRVDG-RGRLHSLRLLSTEWGLPSLVRAILGTSRTLTYIREHSVVDPVEKKMELCSTNITLTNLVSVNERLVYTPHPENPE-MTVLTQEAIITVKGI----SLGSYLESLMANTISSNAKKGWAAIEWIIEHSES 169          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO1_MOUSE (Protein slowmo homolog 1 OS=Mus musculus GN=Slmo1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.308e-18
Identity = 56/179 (31.28%), Postives = 96/179 (53.63%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQD--ICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEA 600
            +K ++ EH++ HPW+ V  A+ RK+ +P N      ++ VD L   +D   G+L++ R L+     P  VR I+G +  + +  E +VVD  ++ M+L + N++L   + V E++ Y PHP+NP   TV  QE  I +K +    S+   +E   A     N+ KG   +E I ++ E+
Sbjct:    1 MKIWSSEHVFGHPWDTVIKAAMRKYPNPMNPC----VVGVDVLERSVDGC-GRLHSLRLLSTEWGLPGLVRAILGANRTLTYIKERSVVDPAARKMELCSTNITLTNLVSVNERLVYTPHPENPEK-TVLTQEAIITVKGI----SLGSYLESLMATTISSNAKKGWAAIEWIIEHSES 169          
The following BLAST results are available for this feature:
BLAST of CX287590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SLMO_DICDI2.257e-2335.15Protein slowmo homolog OS=Dictyostelium discoideum... [more]
SLMO2_HUMAN2.496e-2235.56Protein slowmo homolog 2 OS=Homo sapiens GN=SLMO2 ... [more]
SLMO2_CRIGR2.496e-2235.56Protein slowmo homolog 2 OS=Cricetulus griseus GN=... [more]
SLMO2_MACFA3.259e-2235.00Protein slowmo homolog 2 OS=Macaca fascicularis GN... [more]
SLMO2_BOVIN3.259e-2235.56Protein slowmo homolog 2 OS=Bos taurus GN=SLMO2 PE... [more]
SLMO2_RAT9.483e-2235.00Protein slowmo homolog 2 OS=Rattus norvegicus GN=S... [more]
SLMO2_MOUSE4.706e-2134.44Protein slowmo homolog 2 OS=Mus musculus GN=Slmo2 ... [more]
SLMO2_PIG1.369e-2035.00Protein slowmo homolog 2 OS=Sus scrofa GN=SLMO2 PE... [more]
SLMO1_HUMAN9.813e-1932.40Protein slowmo homolog 1 OS=Homo sapiens GN=SLMO1 ... [more]
SLMO1_MOUSE8.308e-1831.28Protein slowmo homolog 1 OS=Mus musculus GN=Slmo1 ... [more]

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Properties
Property NameValue
Genbank descriptionC01011C01SK Veg1 Citrus clementina cDNA clone C01011C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287590 ID=CX287590; Name=CX287590; organism=Citrus clementina; type=EST; length=662bp
CTCGTGCCGGTTTTCAAGGGTTTTAATGCTCTGCGGTCTGCAATTCTGTT
TGTCTTAAAGATCGTGATGGTGAAAGCATACACACAAGAGCACATTTACA
AGCACCCGTGGGAGCGTGTTACTTCTGCATCTTGGCGCAAGTTTGCTGAC
CCTGAGAACAAGCGCACGTTATCCCATATACTTGAAGTGGACACTTTGAA
CCACAAGCTCGATCCTCTATCTGGCAAGCTATACACAACGCGTGCACTCA
CTGTCCATGCCCCTGGACCTTGGTTTGTTCGCAAAATTATTGGTCAAGAT
ATATGTCACTGTGTTGAATCAACGGTTGTTGATGCCCAGTCAAAGTCAAT
GCAGCTCACTACTCGCAATGTTAGTCTAAAAAAGTATATAGAAGTGGAGG
AGAAGATCCGATACGAACCCCATCCTGATAATCCAACTGGTTGGACAGTT
TGTAGACAAGAGACAAGTATAAGGATTAAGCCATTATCGGCACTGGCATC
AATGGCAGAGAAGGTGGAGCTACGATGTGCAGAAAAGTTCATGCAGAATA
GTGTCAAGGGTAGAGAAGTAATGGAGAGGATCTGTAAGTACCTTGAAGCT
GAATCTCGTGGAATTTCTCTCTAGTTTCTAGTTTTTGAGTTCAATTTCTG
AGTTTTATAGTA
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