CX287607

Overview
NameCX287607
Unique NameCX287607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287607 vs. ExPASy Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.346e-40
Identity = 88/121 (72.73%), Postives = 100/121 (82.64%), Query Frame = 3
Query:  198 MSCN-GMAFFPTNFMLQTPHEDEH--QTPTSLNPILPSCA-PQDFHGVASFLGKRSM--SFSGIDAGEEANGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG 542
            MSCN GM+FFP+NFM+QT +ED+H  Q+P SL P+LPSC+ PQD HG ASFLGKRS       ++ G   NGE+D+SDDGSQ GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG
Sbjct:    1 MSCNNGMSFFPSNFMIQTSYEDDHPHQSP-SLAPLLPSCSLPQDLHGFASFLGKRSPMEGCCDLETGNNMNGEEDYSDDGSQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG 120          
BLAST of CX287607 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSI (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. indica GN=HOX21 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.439e-28
Identity = 81/159 (50.94%), Postives = 90/159 (56.60%), Query Frame = 3
Query:  198 MSCNGMA-----FFPTNFMLQT----------PHEDEHQ----------------------TPTSLNPILPSCAP----QDFHGVASFLGKRSMSFS-GIDAGEEANG--EDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG 542
            M+ NGMA     FFP NF+L            P E  H                        P   NP LPS A     Q+F G+A  LGKR MS+  G   G+E NG  ED+ SDDGSQAGEKKRRLN+EQV+TLEKNFELGNKLEPERKMQLARALG
Sbjct:    1 MASNGMASSPSSFFPPNFLLHMAQQQAAPPHDPQEHHHHHHHGHHHEQQQHHHHLGPPPPPPPHPHNPFLPSSAQCPSLQEFRGMAPMLGKRPMSYGDGGGGGDEVNGGGEDELSDDGSQAGEKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALG 159          
BLAST of CX287607 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSJ (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. japonica GN=HOX21 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.707e-27
Identity = 81/165 (49.09%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  198 MSCNGMA-----FFPTNFMLQTP-------------------------HEDEHQT-------------PTSLNPILPSCAP----QDFHGVASFLGKRSMSFS-GIDAGEEANG--EDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG 542
            M+ NGMA     FFP NF+L                            HE + Q              P   NP LPS A     Q+F G+A  LGKR MS+  G   G+E NG  ED+ SDDGSQAGEKKRRLN+EQV+TLEKNFELGNKLEPERKMQLARALG
Sbjct:    1 MASNGMASSPSSFFPPNFLLHMAQQQAAPPHDPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPPPPPHPHNPFLPSSAQCPSLQEFRGMAPMLGKRPMSYGDGGGGGDEVNGGGEDELSDDGSQAGEKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALG 165          
BLAST of CX287607 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.445e-26
Identity = 68/122 (55.74%), Postives = 82/122 (67.21%), Query Frame = 3
Query:  198 MSCN--GMAFFPTNFMLQTPHEDEHQTPTSLNPILPSCAPQDFHGVASFLGKRS-----MSFSGIDAGEEANGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG 542
            MSCN  G+AFFP NF LQ  H++E   P  L         QDFHG   FLGKRS       F  +D     NG++++SDDGS+ GEKKRRLNMEQ+K LEK+FELGNKLE +RK++LARALG
Sbjct:    1 MSCNNNGLAFFPENFSLQNHHQEEEDHPQLL---------QDFHG---FLGKRSPMNNVQGFCNLDM----NGDEEYSDDGSKMGEKKRRLNMEQLKALEKDFELGNKLESDRKLELARALG 106          
BLAST of CX287607 vs. ExPASy Swiss-Prot
Match: HAT7_ARATH (Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 PE=2 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 63/131 (48.09%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  213 MAFFPTNFMLQTPHEDE-HQTPTSLNPILPSCAPQDFHGVA-SFLGKRSMSFSGI-----------------DAGEEANGEDDFSDDGSQA--GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG 542
            MAF    FM Q  HED  H  P+  +  LPSC P  F+G   +++  RSMSF+G+                 +  ++   ED+ SDDGS    GEKK+RLN+EQV+ LEK+FELGNKLEPERKMQLA+ALG
Sbjct:   22 MAFPQHGFMFQQLHEDNAHHLPSPTS--LPSCPPHLFYGGGGNYMMNRSMSFTGVSDHHHLTQKSPTTTNNMNDQDQVGEEDNLSDDGSHMMLGEKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALG 150          
BLAST of CX287607 vs. ExPASy Swiss-Prot
Match: ATB20_ARATH (Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana GN=ATHB-20 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 57/113 (50.44%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  213 MAFFPTNFMLQTPHEDEHQTPTSLNPILPSCAPQDFHGVASFLGKRSMSFSGIDAGEEAN-GEDDFSDDGSQA--GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG 542
            MAF    FM Q  HED  Q        LPSC P  F+G  +++  RSMS   +         E++ SDDG+    GEKK+RL +EQVK LEK+FELGNKLEPERK+QLA+ALG
Sbjct:   16 MAFPQHGFMFQQLHEDNSQDQ------LPSCPPHLFNGGGNYMMNRSMSLMNVQEDHNQTLDEENLSDDGAHTMLGEKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALG 122          
BLAST of CX287607 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSJ (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 59/146 (40.41%), Postives = 70/146 (47.95%), Query Frame = 3
Query:  198 MSCNGMA------FFPTNFMLQTP--------HEDEHQ------------TPTSLNPILPSCAPQDFHGVASFLGKRSMSFSGIDAGEEANGEDDFSDD-----GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG 542
            M+ NG A      FFP NF+LQ          H  +H              P SL+P LP  A  D      +        SG D G      +D  D      G   GEKKRRL++EQV+TLE++FE GNKLEPERK QLARALG
Sbjct:    1 MASNGAAAGAMAPFFPPNFLLQMQQPLPLHHQHLQDHAHGGHGGHHLLPPPPPSLSPFLPDLA-MDAPPPPMY------EASGGDGGGGGAASEDEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALG 139          
BLAST of CX287607 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 59/146 (40.41%), Postives = 70/146 (47.95%), Query Frame = 3
Query:  198 MSCNGMA------FFPTNFMLQTP--------HEDEHQ------------TPTSLNPILPSCAPQDFHGVASFLGKRSMSFSGIDAGEEANGEDDFSDD-----GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG 542
            M+ NG A      FFP NF+LQ          H  +H              P SL+P LP  A  D      +        SG D G      +D  D      G   GEKKRRL++EQV+TLE++FE GNKLEPERK QLARALG
Sbjct:    1 MASNGAAAGAMAPFFPPNFLLQMQQPLPLHHQHLQDHAHGGHGGHHLLPPPPPSLSPFLPDLA-MDAPPPPMY------EASGGDGGGGGAASEDEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALG 139          
The following BLAST results are available for this feature:
BLAST of CX287607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ATB13_ARATH1.346e-4072.73Homeobox-leucine zipper protein ATHB-13 OS=Arabido... [more]
HOX21_ORYSI3.439e-2850.94Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
HOX21_ORYSJ1.707e-2749.09Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
ATB23_ARATH1.445e-2655.74Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]
HAT7_ARATH1.828e-2148.09Homeobox-leucine zipper protein HAT7 OS=Arabidopsi... [more]
ATB20_ARATH1.185e-2050.44Homeobox-leucine zipper protein ATHB-20 OS=Arabido... [more]
HOX23_ORYSJ1.403e-1340.41Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX23_ORYSI1.403e-1340.41Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionC01011D06SK Veg1 Citrus clementina cDNA clone C01011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287607 ID=CX287607; Name=CX287607; organism=Citrus clementina; type=EST; length=544bp
CTCGTGCCGGCACGAGGTGAAGAAGCTTTAATTTACTTTAAGATCCGTCA
AGAGCTTATATTTGCACTTTTTTAAGTCCAGCTCTATTAATTCCTCATCC
TTCTTTCTCAAGTTTGAACATGACAGTAAGATCATTACCACAGTTCTTAA
GCATATTGGTGGGAAAAGTTTAGCTTAAGCTAGAGCTAGCTAAGGTCATG
TCTTGCAATGGGATGGCTTTCTTCCCAACAAATTTCATGCTTCAAACTCC
CCATGAAGATGAACATCAAACCCCCACTTCTCTGAATCCAATTCTTCCCT
CTTGTGCTCCCCAAGACTTTCATGGGGTTGCATCTTTCTTAGGGAAGCGA
TCAATGTCATTTTCAGGGATTGATGCGGGAGAAGAAGCAAATGGGGAGGA
TGATTTTTCTGATGATGGATCACAAGCAGGAGAGAAGAAGAGGAGGCTTA
ATATGGAACAAGTGAAGACCCTTGAGAAGAACTTTGAATTGGGTAACAAG
CTTGAGCCAGAGAGAAAAATGCAGTTGGCTAGGGCTCTTGGGCT
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