CX287620

Overview
NameCX287620
Unique NameCX287620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length375
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287620 vs. ExPASy Swiss-Prot
Match: AK3_ARATH (Aspartokinase 3, chloroplastic OS=Arabidopsis thaliana GN=AK3 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.207e-54
Identity = 111/124 (89.52%), Postives = 115/124 (92.74%), Query Frame = 3 
Query:    3 NPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLIL 374
            NP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGFLAKVFSTFE LGISVDVVATSEVS+SLTLDPSK  SRELIQ ELD VVEELEKIA+VNLL+HRSIISLIGNVQRSS IL
Sbjct:  369 NPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDITSTRMLGQYGFLAKVFSTFEKLGISVDVVATSEVSISLTLDPSKFCSRELIQHELDQVVEELEKIAVVNLLRHRSIISLIGNVQRSSFIL 492
[Close]
BLAST of CX287620 vs. ExPASy Swiss-Prot
Match: AK1_ARATH (Aspartokinase 1, chloroplastic OS=Arabidopsis thaliana GN=AK1 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 5.968e-53
Identity = 106/124 (85.48%), Postives = 117/124 (94.35%), Query Frame = 3 
Query:    3 NPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLIL 374
            NP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ GFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQELDHVVEELEKIA+VNLL+ R+IISLIGNVQ SSLIL
Sbjct:  372 NPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGNVQHSSLIL 495
[Close]
BLAST of CX287620 vs. ExPASy Swiss-Prot
Match: AK2_ARATH (Aspartokinase 2, chloroplastic OS=Arabidopsis thaliana GN=AK2 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 1.018e-52
Identity = 109/126 (86.51%), Postives = 118/126 (93.65%), Query Frame = 3 
Query:    3 NPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ--ELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLIL 374
            NP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGFLAKVF+TFEDLGISVDVVATSEVS+SLTLDP+KLW RELIQ+  ELD++VEELEKIA+V LLQ RSIISLIGNVQ+SSLIL
Sbjct:  368 NPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYGFLAKVFTTFEDLGISVDVVATSEVSISLTLDPAKLWGRELIQRVNELDNLVEELEKIAVVKLLQRRSIISLIGNVQKSSLIL 493
The following BLAST results are available for this feature:
BLAST of CX287620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AK3_ARATH9.207e-5489.52Aspartokinase 3, chloroplastic OS=Arabidopsis thal... [more]
AK1_ARATH5.968e-5385.48Aspartokinase 1, chloroplastic OS=Arabidopsis thal... [more]
AK2_ARATH1.018e-5286.51Aspartokinase 2, chloroplastic OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC01011E07SK Veg1 Citrus clementina cDNA clone C01011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287620 ID=CX287620; Name=CX287620; organism=Citrus clementina; type=EST; length=375bp
ATAATCCTAATGCTCCAGGAACTCTAATCAGAAGGTCAAGAGATATGAGC
AAGGCAGTGCTAACTAGCATTGTGCTGAAGCGTAATGTTACCATGTTGGA
TATCGTTAGTACTCGCATGCTTGGTCAATATGGTTTCCTTGCGAAGGTAT
TTTCAACCTTTGAAGATTTAGGTATTTCAGTGGATGTCGTTGCTACTAGT
GAAGTCAGTCTTTCCTTGACACTGGACCCATCTAAGCTCTGGAGCAGAGA
GTTAATTCAGCAGGAACTTGACCATGTTGTCGAAGAACTTGAGAAAATTG
CAATTGTCAATCTCCTTCAGCACAGATCAATTATTTCTCTAATTGGCAAT
GTACAGAGATCCTCCCTGATACTTG
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