CX287626

Overview
NameCX287626
Unique NameCX287626
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length340
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287626 vs. ExPASy Swiss-Prot
Match: G6PD6_ARATH (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=ACG12 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.437e-38
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 2
Query:    2 YLINDKSAPGQSDQGSYFVQLIKHVSGSYDTEEGFQLLDKEISAHESSKNSLDGSSHTLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVAEKPFGKDSDSSEKLTAHIG 340
            YL+++K+A  Q++  S F+QLIK+VSG YD EEGFQ LDK IS HE SKNS +GSS  LFY ALPPSVYPSV +MIK CCMN+SDLGGWTRIV EKPFGKD +S+E+L++ IG
Sbjct:   88 YLVDEKNAE-QAEALSKFLQLIKYVSGPYDAEEGFQRLDKAISEHEISKNSTEGSSRRLFYLALPPSVYPSVCKMIKTCCMNKSDLGGWTRIVVEKPFGKDLESAEQLSSQIG 199          
BLAST of CX287626 vs. ExPASy Swiss-Prot
Match: G6PD_MEDSA (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.451e-38
Identity = 75/114 (65.79%), Postives = 92/114 (80.70%), Query Frame = 2
Query:    2 YLINDKSA-PGQSDQGSYFVQLIKHVSGSYDTEEGFQLLDKEISAHESSKNSLDGSSHTLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVAEKPFGKDSDSSEKLTAHIG 340
            YL+ +K A P Q D  S F+QL+K+VSG YD+E+GF+LLDKEIS HE  KNS +GSS  LFY ALPPSVYPSV +MIK CCMN+SDLGGWTR+V EKPFG+D +S+E+L+  IG
Sbjct:   86 YLVPEKGASPKQLDDVSKFLQLVKYVSGPYDSEDGFRLLDKEISEHEYLKNSKEGSSRRLFYLALPPSVYPSVCKMIKTCCMNKSDLGGWTRVVVEKPFGRDLESAEELSTQIG 199          
BLAST of CX287626 vs. ExPASy Swiss-Prot
Match: G6PD_SOLTU (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform OS=Solanum tuberosum GN=G6PDH PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.942e-35
Identity = 74/106 (69.81%), Postives = 85/106 (80.19%), Query Frame = 2
Query:   29 GQSDQG--SYFVQLIKHVSGSYDTEEGFQLLDKEISAHESSKNSLDGSSHTLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVAEKPFGKDSDSSEKLTAHIG 340
            G+ ++G  S F+QLIK+VSGSYD+ EGF  LDK IS HE SKNS +GSS  LFYFALPPSVYPSV RMIK  CMN+SDLGGWTR V EKPFGKD  SSE+L++ IG
Sbjct:   90 GKENEGEVSEFLQLIKYVSGSYDSAEGFTSLDKAISEHEFSKNSTEGSSRRLFYFALPPSVYPSVCRMIKSYCMNKSDLGGWTRTVVEKPFGKDLASSEQLSSQIG 195          
BLAST of CX287626 vs. ExPASy Swiss-Prot
Match: G6PD5_ARATH (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=ACG9 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.638e-35
Identity = 69/113 (61.06%), Postives = 90/113 (79.65%), Query Frame = 2
Query:    2 YLINDKSAPGQSDQGSYFVQLIKHVSGSYDTEEGFQLLDKEISAHESSKNSLDGSSHTLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVAEKPFGKDSDSSEKLTAHIG 340
            YL+++K+A  +++  S F++LIK+VSG YD+EEGF+ LDK I  HE SK + +GSS  LFY ALPPSVYP VS+MIK  C N+SDLGGWTRIV EKPFGKD +S+E+L++ IG
Sbjct:   88 YLVDEKNASKKTEALSKFLKLIKYVSGPYDSEEGFKRLDKAILEHEISKKTAEGSSRRLFYLALPPSVYPPVSKMIKAWCTNKSDLGGWTRIVVEKPFGKDLESAEQLSSQIG 200          
BLAST of CX287626 vs. ExPASy Swiss-Prot
Match: G6PD_CULPI (Glucose-6-phosphate 1-dehydrogenase (Fragment) OS=Culex pipiens GN=ZW PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 2
Query:   71 HVSGSYDTEEGFQLLDKEISAHESSKNSLDGSSHTLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVAEKPFGKDSDSSEKLTAHI 337
            +V+GSYD    F+LL++EI   E  K     +++ LFY  LPPSV+ +V+  I+  CM    L GW RI+ EKPFG+D+DSS KL+ H+
Sbjct:   56 YVAGSYDGRRDFELLNQEIGKFEVGK-----TANRLFYLRLPPSVFETVTVHIRNTCMG---LKGWNRIIVEKPFGRDADSSNKLSEHL 136          
BLAST of CX287626 vs. ExPASy Swiss-Prot
Match: G6PD_CAEEL (Glucose-6-phosphate 1-dehydrogenase OS=Caenorhabditis elegans GN=gspd-1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 2
Query:   53 FVQLIKHVSGSYDTEEGFQLLDKEISAHESSKNSLDGSSHTLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVAEKPFGKDSDSSEKLTAHI 337
            F++   +V G YDT EGFQ L   I   +  K S + + + L+Y ALPPSV+  VS  +KK CM+  D   WTR++ EKPFG D  SS +L+ H+
Sbjct:  103 FIKKCSYVQGQYDTSEGFQRLQSSID--DFQKESNNQAVNRLYYLALPPSVFNVVSTELKKNCMDHGD--SWTRVIIEKPFGHDLKSSCELSTHL 193          
BLAST of CX287626 vs. ExPASy Swiss-Prot
Match: G6PD_SARBU (Glucose-6-phosphate 1-dehydrogenase (Fragment) OS=Sarcophaga bullata GN=ZW PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.495e-15
Identity = 40/107 (37.38%), Postives = 67/107 (62.62%), Query Frame = 2
Query:   17 KSAPGQSDQGSYFVQLIKHVSGSYDTEEGFQLLDKEISAHESSKNSLDGSSHTLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVAEKPFGKDSDSSEKLTAHI 337
            K  P +  +   F +L  +VSGSYD   GF++L +++   E+      G ++ +FY ALPPSV+ SV+  IK+ C+++    GW R++ EKPFG+D  +S++L+ H+
Sbjct:   38 KVQPHEQQRYEEFWELNHYVSGSYDGRLGFEMLQQQMEIMENK-----GVANRVFYLALPPSVFNSVTVRIKEICLSKK---GWNRVIIEKPFGRDDVTSKQLSDHL 136          
BLAST of CX287626 vs. ExPASy Swiss-Prot
Match: G6PD_MACRO (Glucose-6-phosphate 1-dehydrogenase OS=Macropus robustus GN=G6PD PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:   17 KSAPGQSDQGSYFVQLIKHVSGSYDTEEGFQLLDKEI-SAHESSKNSLDGSSHTLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVAEKPFGKDSDSSEKLTAHI 337
            K+ P ++ +   F     +V+G YD    FQ L+  + S H  S+      ++ LFY ALPP+VY +V++ IK+ CM++    GW R++ EKPFGKD  SS+KL+ HI
Sbjct:   89 KATPEENLKLEEFFSRNSYVAGQYDEPASFQRLNAHMNSLHHGSQ------ANRLFYLALPPTVYEAVTKNIKETCMSQI---GWNRVIVEKPFGKDLQSSDKLSNHI 187          
BLAST of CX287626 vs. ExPASy Swiss-Prot
Match: G6PD_DROME (Glucose-6-phosphate 1-dehydrogenase OS=Drosophila melanogaster GN=Zw PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 2
Query:   17 KSAPGQSDQGSYFVQLIKHVSGSYDTEEGFQLLDKEISAHESSKNSLDGSSHTLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVAEKPFGKDSDSSEKLTAHI 337
            K  P +  +   F  L ++VSG YD   GF+LL++++   E+   +     + +FY ALPPSV+  V+  IK+ CM+   + GW R++ EKPFG+D  SS+ L+ H+
Sbjct:   93 KVQPHEQKKYEEFWALNEYVSGRYDGRTGFELLNQQLEIMENKNKA-----NRIFYLALPPSVFEEVTVNIKQICMS---VCGWNRVIIEKPFGRDDASSQALSDHL 191          
BLAST of CX287626 vs. ExPASy Swiss-Prot
Match: G6PD_DROYA (Glucose-6-phosphate 1-dehydrogenase (Fragment) OS=Drosophila yakuba GN=Zw PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.379e-14
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 2
Query:   53 FVQLIKHVSGSYDTEEGFQLLDKEISAHESSKNSLDGSSHTLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVAEKPFGKDSDSSEKLTAHI 337
            F  L ++VSG YD   GF+LL++++   E+   +     + +FY ALPPSV+  V+  IK+ CM+   + GW R++ EKPFG+D  SS+ L+ H+
Sbjct:   99 FWALNEYVSGRYDGRTGFELLNQQLELMENKNKA-----NRIFYLALPPSVFEEVTVNIKQICMS---VCGWNRVIIEKPFGRDDASSQALSDHL 185          
The following BLAST results are available for this feature:
BLAST of CX287626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
G6PD6_ARATH1.437e-3868.14Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD_MEDSA2.451e-3865.79Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD_SOLTU1.942e-3569.81Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD5_ARATH9.638e-3561.06Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD_CULPI2.232e-1546.07Glucose-6-phosphate 1-dehydrogenase (Fragment) OS=... [more]
G6PD_CAEEL2.232e-1544.21Glucose-6-phosphate 1-dehydrogenase OS=Caenorhabdi... [more]
G6PD_SARBU6.495e-1537.38Glucose-6-phosphate 1-dehydrogenase (Fragment) OS=... [more]
G6PD_MACRO1.447e-1439.81Glucose-6-phosphate 1-dehydrogenase OS=Macropus ro... [more]
G6PD_DROME3.223e-1437.38Glucose-6-phosphate 1-dehydrogenase OS=Drosophila ... [more]
G6PD_DROYA9.379e-1440.00Glucose-6-phosphate 1-dehydrogenase (Fragment) OS=... [more]

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Properties
Property NameValue
Genbank descriptionC01011F01SK Veg1 Citrus clementina cDNA clone C01011F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287626 ID=CX287626; Name=CX287626; organism=Citrus clementina; type=EST; length=340bp
ATATCTTATCAATGACAAAAGCGCACCGGGACAATCAGATCAAGGGTCAT
ACTTTGTGCAGCTGATTAAACATGTAAGTGGATCTTATGACACCGAAGAG
GGCTTTCAATTGCTGGACAAGGAAATTTCTGCACATGAATCATCAAAAAA
CAGTTTGGATGGATCATCTCATACACTCTTTTATTTTGCACTTCCACCGT
CTGTATATCCATCTGTTTCCAGGATGATTAAGAAGTGCTGCATGAATAGA
TCTGATCTTGGTGGCTGGACACGTATTGTTGCTGAGAAGCCATTTGGCAA
GGATTCGGACTCATCTGAGAAACTTACTGCCCATATTGGG
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