CX287632

Overview
NameCX287632
Unique NameCX287632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RK5_ARATH (50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.227e-37
Identity = 83/120 (69.17%), Postives = 92/120 (76.67%), Query Frame = 3
Query:   54 MACPSLLHSSASSFHGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413
            MA PSLL SSASSFHGRF  L++ S  R   P   NV     VK +A G VLVEKSEAEKT RLKT YLE+I+P L+EEF Y NIHQVPK++KIVVNCGIGDAAQN KGLEAAM D+ALI
Sbjct:    1 MASPSLLQSSASSFHGRFSPLAAPSSARMLSPPLRNV-----VKVSASGTVLVEKSEAEKTQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALI 115          
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RK5_SPIOL (50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea GN=RPL5 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.556e-24
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 3
Query:  189 AAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413
            AAG  V V+K+EAE   RLKT Y+EK+VPLL+EEFSY+NI +VPK+ KIVVNCGIGDA+QNAKGL+AA+N+LALI
Sbjct:    1 AAGTAVFVDKAEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALI 75          
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RK5_ORYSJ (50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL5 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.245e-22
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  198 GIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413
            GIVLV+ +EA+K  RLK  Y +K+VPL+ EEF YTN+HQVPK+EKIVVNCG+G  A N+KGLE+AM DLA+I
Sbjct:   63 GIVLVDPTEAQKVHRLKAVYDQKVVPLITEEFGYTNVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMI 134          
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RK5_CHLAT (50S ribosomal protein L5, chloroplastic OS=Chlorokybus atmophyticus GN=rpl5 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.475e-16
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  240 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413
            RLK  YLEK  P LRE F Y N+HQ+P+IEKI++NCG+G+A+QNAK L++AM +L++I
Sbjct:    4 RLKAIYLEKAAPRLREMFEYKNVHQIPRIEKIIINCGLGEASQNAKSLDSAMKELSII 61          
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RL5_CYAP7 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7424) GN=rplE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.725e-15
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 3
Query:  234 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413
            T RLKT Y E IVP L+E+F+YTNIHQVPK+ K+ VN G+GDA+QNAK LE+++ +LA I
Sbjct:    2 TQRLKTVYYETIVPKLKEQFNYTNIHQVPKVIKVTVNRGLGDASQNAKALESSIAELATI 61          
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RL5_CYAP4 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.725e-15
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 3
Query:  240 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413
            RLKT YLE  VP L E+F Y NIHQVPK+ KI +N G+G+AAQNAK LEA++N++ALI
Sbjct:    4 RLKTYYLENAVPKLMEQFKYKNIHQVPKLVKITINRGLGEAAQNAKSLEASLNEIALI 61          
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RK5_ZYGCR (50S ribosomal protein L5, chloroplastic OS=Zygnema circumcarinatum GN=rpl5 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.842e-15
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  234 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413
            T RLKT YL  +VP LR++  Y NIHQVP++ KIV+NCG+G+A+QNAK LE+ + DL+ I
Sbjct:    2 TQRLKTFYLNTVVPKLRKQLEYQNIHQVPQVTKIVINCGLGEASQNAKSLESTLRDLSFI 61          
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RL5_ANASP (50S ribosomal protein L5 OS=Anabaena sp. (strain PCC 7120) GN=rplE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.559e-15
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  234 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413
            T RLKT Y E IVP L ++F YTN+HQVPK+ KI VN G+G+AAQNAK LEA++ ++A I
Sbjct:    3 TTRLKTLYQETIVPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATI 62          
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RL5_NOSP7 (50S ribosomal protein L5 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.118e-14
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 3
Query:  234 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413
            T RLK+ Y E IVP L  +F YTN+HQVPK+ K+ +N G+G+AAQNAK LEA++N++AL+
Sbjct:    3 TTRLKSLYQETIVPKLINQFQYTNVHQVPKLVKVTINRGLGEAAQNAKSLEASINEIALV 62          
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RL5_ANAVT (50S ribosomal protein L5 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.118e-14
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  234 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413
            T RLKT Y E I+P L ++F YTN+HQVPK+ KI VN G+G+AAQNAK LEA++ ++A I
Sbjct:    3 TTRLKTLYQETIIPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATI 62          
The following BLAST results are available for this feature:
BLAST of CX287632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
RK5_ARATH1.227e-3769.1750S ribosomal protein L5, chloroplastic OS=Arabido... [more]
RK5_SPIOL1.556e-2472.0050S ribosomal protein L5, chloroplastic OS=Spinaci... [more]
RK5_ORYSJ3.245e-2266.6750S ribosomal protein L5, chloroplastic OS=Oryza s... [more]
RK5_CHLAT3.475e-1660.3450S ribosomal protein L5, chloroplastic OS=Chlorok... [more]
RL5_CYAP71.725e-1563.3350S ribosomal protein L5 OS=Cyanothece sp. (strain... [more]
RL5_CYAP41.725e-1565.5250S ribosomal protein L5 OS=Cyanothece sp. (strain... [more]
RK5_ZYGCR3.842e-1558.3350S ribosomal protein L5, chloroplastic OS=Zygnema... [more]
RL5_ANASP8.559e-1561.6750S ribosomal protein L5 OS=Anabaena sp. (strain P... [more]
RL5_NOSP71.118e-1458.3350S ribosomal protein L5 OS=Nostoc punctiforme (st... [more]
RL5_ANAVT1.118e-1460.0050S ribosomal protein L5 OS=Anabaena variabilis (s... [more]

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Properties
Property NameValue
Genbank descriptionC01011F08SK Veg1 Citrus clementina cDNA clone C01011F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287632 ID=CX287632; Name=CX287632; organism=Citrus clementina; type=EST; length=414bp
CTCGTGCCGAATTCGGCACGAGGGAACTACAGCAGGCAAAGAAACGAAAA
CTCATGGCGTGTCCTTCGCTGTTACACTCCTCTGCGTCGTCGTTTCACGG
CCGATTCCCCGCTCTCTCATCTTCATCATATGTACGGCCCACATATCCAA
ACCCTATAAATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAGGC
ATTGTGTTGGTGGAGAAATCCGAAGCAGAGAAGACCGGGCGGCTCAAAAC
CACGTATCTCGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTATA
CTAACATTCACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTGGT
ATTGGAGATGCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAATGA
CTTGGCACTCATTA
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