CX287632
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RK5_ARATH (50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 1.227e-37 Identity = 83/120 (69.17%), Postives = 92/120 (76.67%), Query Frame = 3 Query: 54 MACPSLLHSSASSFHGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413 MA PSLL SSASSFHGRF L++ S R P NV VK +A G VLVEKSEAEKT RLKT YLE+I+P L+EEF Y NIHQVPK++KIVVNCGIGDAAQN KGLEAAM D+ALI Sbjct: 1 MASPSLLQSSASSFHGRFSPLAAPSSARMLSPPLRNV-----VKVSASGTVLVEKSEAEKTQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALI 115
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RK5_SPIOL (50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea GN=RPL5 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 1.556e-24 Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 3 Query: 189 AAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413 AAG V V+K+EAE RLKT Y+EK+VPLL+EEFSY+NI +VPK+ KIVVNCGIGDA+QNAKGL+AA+N+LALI Sbjct: 1 AAGTAVFVDKAEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALI 75
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RK5_ORYSJ (50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL5 PE=2 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 3.245e-22 Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 3 Query: 198 GIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413 GIVLV+ +EA+K RLK Y +K+VPL+ EEF YTN+HQVPK+EKIVVNCG+G A N+KGLE+AM DLA+I Sbjct: 63 GIVLVDPTEAQKVHRLKAVYDQKVVPLITEEFGYTNVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMI 134
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RK5_CHLAT (50S ribosomal protein L5, chloroplastic OS=Chlorokybus atmophyticus GN=rpl5 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.475e-16 Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 3 Query: 240 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413 RLK YLEK P LRE F Y N+HQ+P+IEKI++NCG+G+A+QNAK L++AM +L++I Sbjct: 4 RLKAIYLEKAAPRLREMFEYKNVHQIPRIEKIIINCGLGEASQNAKSLDSAMKELSII 61
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RL5_CYAP7 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7424) GN=rplE PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.725e-15 Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 3 Query: 234 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413 T RLKT Y E IVP L+E+F+YTNIHQVPK+ K+ VN G+GDA+QNAK LE+++ +LA I Sbjct: 2 TQRLKTVYYETIVPKLKEQFNYTNIHQVPKVIKVTVNRGLGDASQNAKALESSIAELATI 61
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RL5_CYAP4 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplE PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.725e-15 Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 3 Query: 240 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413 RLKT YLE VP L E+F Y NIHQVPK+ KI +N G+G+AAQNAK LEA++N++ALI Sbjct: 4 RLKTYYLENAVPKLMEQFKYKNIHQVPKLVKITINRGLGEAAQNAKSLEASLNEIALI 61
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RK5_ZYGCR (50S ribosomal protein L5, chloroplastic OS=Zygnema circumcarinatum GN=rpl5 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.842e-15 Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 3 Query: 234 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413 T RLKT YL +VP LR++ Y NIHQVP++ KIV+NCG+G+A+QNAK LE+ + DL+ I Sbjct: 2 TQRLKTFYLNTVVPKLRKQLEYQNIHQVPQVTKIVINCGLGEASQNAKSLESTLRDLSFI 61
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RL5_ANASP (50S ribosomal protein L5 OS=Anabaena sp. (strain PCC 7120) GN=rplE PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.559e-15 Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 3 Query: 234 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413 T RLKT Y E IVP L ++F YTN+HQVPK+ KI VN G+G+AAQNAK LEA++ ++A I Sbjct: 3 TTRLKTLYQETIVPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATI 62
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RL5_NOSP7 (50S ribosomal protein L5 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplE PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.118e-14 Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 3 Query: 234 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413 T RLK+ Y E IVP L +F YTN+HQVPK+ K+ +N G+G+AAQNAK LEA++N++AL+ Sbjct: 3 TTRLKSLYQETIVPKLINQFQYTNVHQVPKLVKVTINRGLGEAAQNAKSLEASINEIALV 62
BLAST of CX287632 vs. ExPASy Swiss-Prot
Match: RL5_ANAVT (50S ribosomal protein L5 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplE PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.118e-14 Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 3 Query: 234 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 413 T RLKT Y E I+P L ++F YTN+HQVPK+ KI VN G+G+AAQNAK LEA++ ++A I Sbjct: 3 TTRLKTLYQETIIPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATI 62 The following BLAST results are available for this feature:
BLAST of CX287632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 156
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287632 ID=CX287632; Name=CX287632; organism=Citrus clementina; type=EST; length=414bpback to top |