CX287641

Overview
NameCX287641
Unique NameCX287641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287641 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 6.999e-16
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   13 ASCRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPVLQDDGPSSDNY 162
            A  R+QGAVFDLPEEIAKELL K +P GN++S ITKLP LQDDGPSSDNY
Sbjct:  592 ADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPPLQDDGPSSDNY 641
[Close]
BLAST of CX287641 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.473e-15
Identity = 34/47 (72.34%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   22 RVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPVLQDDGPSSDNY 162
            +VQGAVFDLPEEIA++LL+ ++PPGNTI+K+TKLP LQDDGP++D+Y
Sbjct:  595 KVQGAVFDLPEEIARDLLSMELPPGNTITKVTKLPALQDDGPATDSY 641
The following BLAST results are available for this feature:
BLAST of CX287641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RH3_ARATH6.999e-1678.00DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
RH3_ORYSJ3.473e-1572.34DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionC01011G05SK Veg1 Citrus clementina cDNA clone C01011G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287641 ID=CX287641; Name=CX287641; organism=Citrus clementina; type=EST; length=446bp
ATTCGGCACGAGGCCTCGTGCCGGGTTCAGGGAGCTGTTTTTGATCTTCC
GGAGGAGATTGCAAAGGAGTTGCTAAATAAACAAATACCTCCTGGAAACA
CCATTTCCAAGATCACTAAGTTGCCTGTCTTGCAAGATGATGGGCCCTCA
AGCGATAACTATGGCAGGTTCTCTAGCGGGGATCGCTTTTCCAGAGGAGG
AGGTTCTCGCTTTTCCAGGGGAGGAGCCAGGGGAGGAGGTTCTCGCTTTT
CCAGGGGAGGAGCCAGGGGAGGAGGTTTTAGATCATCCCGCAGTTGGGGC
AGTGATGATGAGGATGGATTTAGTTCATCCCGTGGCGGTCGCAGTTTTAG
ATCTGGAAATAACCAAGGGTCCAGGTTTTCAACAAGCAGTGATGATGATT
GGTTGATTGGTGGTAGTAGGTCTAGCAGATCATCGTCCCGGGACAG
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