CX287684

Overview
NameCX287684
Unique NameCX287684
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287684 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.309e-20
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 2
Query:  428 QETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 571
            +ETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF
Sbjct:   12 KETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 59          
BLAST of CX287684 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 2
Query:  428 QETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 571
            +ETQRLLSEPAPGISASPSE+NMRYFNVMILGPTQSPYEGGVFKLELF
Sbjct:   12 KETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELF 59          
BLAST of CX287684 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 2
Query:  428 QETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 571
            +ETQRL++EPAPGISA+P+ DN RYF V I GP  SP+EGGVF LELF
Sbjct:   10 KETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELF 57          
BLAST of CX287684 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.664e-13
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2
Query:  428 QETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 571
            +ETQRL+ EP PGI+A P E+N RYF+V++ GP  SP+EGGVFKLELF
Sbjct:   10 KETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELF 57          
BLAST of CX287684 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 2
Query:  428 QETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 571
            +ETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELF
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELF 57          
BLAST of CX287684 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 2
Query:  428 QETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 571
            +ETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELF
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELF 57          
BLAST of CX287684 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 2
Query:  428 QETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 571
            +ETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELF
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELF 57          
BLAST of CX287684 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 2
Query:  428 QETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 571
            +ETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELF
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELF 57          
BLAST of CX287684 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 2
Query:  428 QETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 571
            +ETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELF
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELF 57          
BLAST of CX287684 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 2
Query:  428 QETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 571
            +ETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELF
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELF 57          
The following BLAST results are available for this feature:
BLAST of CX287684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UBC35_ARATH2.309e-2097.92Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC36_ARATH6.720e-2095.83Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBE2N_DICDI2.094e-1370.83Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_DROME4.664e-1366.67Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBE2N_RAT6.092e-1368.75Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB6.092e-1368.75Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE6.092e-1368.75Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_MACFA6.092e-1368.75Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_HUMAN6.092e-1368.75Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN6.092e-1368.75Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC01012C04SK Veg1 Citrus clementina cDNA clone C01012C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287684 ID=CX287684; Name=CX287684; organism=Citrus clementina; type=EST; length=571bp
AATTCGGCACGAGGGAAAACCCTATCAGCGTTCTTTCTCTGCAACAACAA
GAAGGTTAAAAAACAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATC
TCCCTCGACGTATCATCAAGGTTTTCCCTCTTTCTCTTCAGTTCTCGATT
ACCCTTCCAAATTTTCAGATCGGTTGGTTTGTGAAACAAGAATTCCAATT
TGTTATTTTTCGACAATTTTGGTGAAGGGAGTAATAGTTGTTTTGTGTGT
TAGATGCTCAAATTTTGTTGTAAAGGGTTTATCGGGTGATGGGTTTTGAT
TGCTTTGCTCATTTGATCGTTCAGTCGAAGAATCTTTAGCTTAATTAAGA
GCTTTGGCGACAATAAAATAGAGAAATTGGTTTTTTTCTTTTTAATTTAT
TTGATTTTTTTTCTTTGTTGATCCAAGCAGGAAACACAGCGTCTCCTCAG
TGAACCAGCACCAGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGAT
ACTTTAATGTGATGATCCTTGGTCCGACGCAATCTCCATATGAAGGAGGG
GTGTTCAAATTGGAATTATTT
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