CX287689
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.082e-37 Identity = 76/108 (70.37%), Postives = 84/108 (77.78%), Query Frame = 1 Query: 76 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390 M ++ AVLNGL SSF+ GGKK+QALL T RVT + PKKSWIPAVK GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM Sbjct: 1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 108
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 2.720e-37 Identity = 78/107 (72.90%), Postives = 82/107 (76.64%), Query Frame = 1 Query: 82 AATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390 A TS AVLNGL SSF+ GG KSQALLA RV L KKSWIPAV+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM Sbjct: 2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 108
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 4.342e-35 Identity = 75/113 (66.37%), Postives = 85/113 (75.22%), Query Frame = 1 Query: 76 MAAATSG-AVLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390 MAAATS A++NG S F++GGKKS Q+LL ++V T PKKSWIPAVKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM Sbjct: 1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 113
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.514e-15 Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 1 Query: 214 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390 P + W P PEWLDGSLPGD+GFDPLGLG DP LKW +AEL+H RWAM Sbjct: 63 PDRPLWFPGSTP------PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAM 115
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.518e-14 Identity = 40/110 (36.36%), Postives = 57/110 (51.82%), Query Frame = 1 Query: 61 VEIISMAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390 V S ++ +G+++ +SF+ GG++ + T P + W P P WLDGSLPGD+GFDPLGL DP L+W ++AEL+H RWAM Sbjct: 13 VAFSSPSSRRNGSIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP------PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAM 115
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.810e-12 Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 Query: 220 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390 K W+P L +P +L GSLPGD GFDPLGL +DP L+W+ +AEL++GRWAM Sbjct: 53 KGEWLPG------LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAM 103
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.151e-11 Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 Query: 220 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390 K W+P L +P++L GSL GD GFDPLGL +DP LKW+ +AEL++GRWAM Sbjct: 54 KGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAM 104
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11 Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1 Query: 220 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390 K SW+P ++ +P +LDGSL GD GFDPL L +DP L+W+ +A++++GRWAM Sbjct: 33 KGSWLPGLQ------SPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAM 83 The following BLAST results are available for this feature:
BLAST of CX287689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287689 ID=CX287689; Name=CX287689; organism=Citrus clementina; type=EST; length=392bpback to top |