CX288484

Overview
NameCX288484
Unique NameCX288484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288484 vs. ExPASy Swiss-Prot
Match: PR2E1_ORYSJ (Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.918e-66
Identity = 124/157 (78.98%), Postives = 141/157 (89.81%), Query Frame = -1
Query:  216 KLPDATLSYFDSA-GELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 683
            KLPDATLSYFDS  GEL+T+TV DLT+ KK +LFAVPGAFTPTC+QKH+PGFV K+ EL++KGVD VAC+SVNDAFVM+AWKE+LG+ DEVLLLSDGNG   +A+G ELDLSDKP GLGVRSRRYALLAE+GVVKVLNLEEGGAFT S AE+MLKAL
Sbjct:   76 KLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232          
BLAST of CX288484 vs. ExPASy Swiss-Prot
Match: PRX2E_ARATH (Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.260e-64
Identity = 120/157 (76.43%), Postives = 141/157 (89.81%), Query Frame = -1
Query:  216 KLPDATLSYFD-SAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 683
            KLPD+TLSY D S G+++T+TVS LT+ KK ILFAVPGAFTPTCSQKH+PGFV K+ EL+SKG+D +ACISVNDAFVM+AW+++LGINDEV+LLSDGNG FT  +G ELDL DKP+GLGVRSRRYA+LA++GVVKVLNLEEGGAFT S AEDMLKAL
Sbjct:   78 KLPDSTLSYLDPSTGDVKTVTVSSLTAGKKTILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFTGKLGVELDLRDKPVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDMLKAL 234          
BLAST of CX288484 vs. ExPASy Swiss-Prot
Match: PR2E2_ORYSJ (Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-2 PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.260e-64
Identity = 122/158 (77.22%), Postives = 144/158 (91.14%), Query Frame = -1
Query:  216 KLPDATLSYFDSA-GELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGIND-EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 683
            KLPDATLSYFD A GEL+T+TV++LT+ +KA+LFAVPGAFTPTCSQKHLPGF+EK+ EL +KGVD +AC+SVNDAFVM+AWKE+LG+ D +VLLLSDGN   T+A+G E+DLSDKPMGLGVRSRRYALLA++GVVKVLNLEEGGAFT S AE+MLKAL
Sbjct:   68 KLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLKAL 225          
BLAST of CX288484 vs. ExPASy Swiss-Prot
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.310e-45
Identity = 91/155 (58.71%), Postives = 113/155 (72.90%), Query Frame = -1
Query:  216 LPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 680
            +PD T+S+FD   +LQT +V  L + KK ILF VPGAFTPTCS KH+PGF+EK+ ELKSKGVD + C SVND FVMKAW +    N  V  ++DG+G +T  +G ELDL DK  GLGVRSRR+ALL ++  V V N+E GG FT S A+D+LKAL
Sbjct:   10 VPDGTISFFDENDQLQTASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK--GLGVRSRRFALLLDDLKVTVANVESGGEFTVSSADDILKAL 162          
BLAST of CX288484 vs. ExPASy Swiss-Prot
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.711e-45
Identity = 89/155 (57.42%), Postives = 116/155 (74.84%), Query Frame = -1
Query:  216 LPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 680
            LPD  L +FD   +LQ ++V  L + KK +LF VPGAFTPTCS +H+PGF+ ++ +LK+KGVD +  +SVND FVMKAW ++   N  V  L+DG G +TKA+G ELDLS+K  GLG+RSRR+ALLA+N  V V N+EEGG FT SGAE++LKAL
Sbjct:   10 LPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEK--GLGIRSRRFALLADNLKVTVANIEEGGQFTISGAEEILKAL 162          
BLAST of CX288484 vs. ExPASy Swiss-Prot
Match: PRX2D_ARATH (Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.813e-45
Identity = 88/155 (56.77%), Postives = 112/155 (72.26%), Query Frame = -1
Query:  216 LPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 680
            +PD T+S+FD   +LQT++V  + + KK ILF VPGAFTPTCS  H+PGF+ K+ ELKSKG+D + C SVND FVMKAW +    N  V  ++DG+G +T  +G ELDL DK  GLG+RSRR+ALL +N  V V N+E GG FT S AED+LKAL
Sbjct:   10 VPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDK--GLGIRSRRFALLLDNLKVTVANVENGGEFTVSSAEDILKAL 162          
BLAST of CX288484 vs. ExPASy Swiss-Prot
Match: PRX2C_ARATH (Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.813e-45
Identity = 88/155 (56.77%), Postives = 112/155 (72.26%), Query Frame = -1
Query:  216 LPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 680
            +PD T+S+FD   +LQT++V  + + KK ILF VPGAFTPTCS  H+PGF+ K+ ELKSKG+D + C SVND FVMKAW +    N  V  ++DG+G +T  +G ELDL DK  GLG+RSRR+ALL +N  V V N+E GG FT S AED+LKAL
Sbjct:   10 VPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK--GLGIRSRRFALLLDNLKVTVANVESGGEFTVSSAEDILKAL 162          
BLAST of CX288484 vs. ExPASy Swiss-Prot
Match: PRX2A_ARATH (Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.117e-31
Identity = 68/141 (48.23%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  258 LPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGG 680
            +PD ++S+FD   +LQT++V  L + KK ILF VPGAF PTCS  H+ GF+EK+ ELKS GVD + C+S +D F++ A  E    N  V  + DG+G + + +G EL++ DK  GLGVRSR +ALL +N  V V+N+  GG
Sbjct:   10 VPDGSISFFDDDDQLQTVSVHSLAAGKKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDPFMITACSE----NKHVKFVEDGSGEYIQLLGLELEVKDK--GLGVRSRGFALLLDNLKVIVVNVGSGG 144          
BLAST of CX288484 vs. ExPASy Swiss-Prot
Match: PRX5_HAEIN (Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influenzae GN=HI0572 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.967e-25
Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = -1
Query:  216 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNL---EEGGAFTFSGAEDMLKAL 629
            +T S+L  NK  I+F++PGAFTPTCS  HLP + E +   K  GVD +  +SVND FVM AWKE+   ++ +  + DGNG FT+ +G  +   D  +G G RS RY++L +NGVV+ + +   E G  F  S A+ MLK L
Sbjct:   25 VTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKED-EKSENISFIPDGNGEFTEGMGMLVGKED--LGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYL 162          
BLAST of CX288484 vs. ExPASy Swiss-Prot
Match: PRDX5_MOUSE (Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=Prdx5 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 61/139 (43.88%), Postives = 87/139 (62.59%), Query Frame = -1
Query:  216 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 629
            + +++L   KK +LF VPGAFTP CS+ HLPGFVE++  LK+KG   VAC+SVND FV++ W        +V LL+D  G F KA    LD S   +    R +R++++ +NG+VK LN+E +G   T S A ++L  L
Sbjct:   72 VNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDVFVIEEWGRAHQAEGKVRLLADPTGAFGKATDLLLDDSLVSLFGNRRLKRFSMVIDNGIVKALNVEPDGTGLTCSLAPNILSQL 210          
The following BLAST results are available for this feature:
BLAST of CX288484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PR2E1_ORYSJ3.918e-6678.98Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa ... [more]
PRX2E_ARATH1.260e-6476.43Peroxiredoxin-2E, chloroplastic OS=Arabidopsis tha... [more]
PR2E2_ORYSJ1.260e-6477.22Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa ... [more]
PRX2B_ARATH1.310e-4558.71Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB... [more]
PRX2C_ORYSJ1.711e-4557.42Peroxiredoxin-2C OS=Oryza sativa subsp. japonica G... [more]
PRX2D_ARATH3.813e-4556.77Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID... [more]
PRX2C_ARATH3.813e-4556.77Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC... [more]
PRX2A_ARATH9.117e-3148.23Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA... [more]
PRX5_HAEIN1.967e-2544.68Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influen... [more]
PRDX5_MOUSE5.724e-2543.88Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01020H10SK Veg1 Citrus clementina cDNA clone C01020H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288484 ID=CX288484; Name=CX288484; organism=Citrus clementina; type=EST; length=683bp
AGGGTCTCGAGTTTTTTTTTTTTTTTTTTGAAGATTGGGATAAAAAATTA
AATTGAGCAGGATAAAAATCCAAACAGCTCTGAAAATTCAAATGCACAAG
GAGAAGTAGAAATTTCAAAACCCGAAACACGAGTTTTTAGTAACAAAGAC
ACATTATTCAACACTCTAATGAAAGTTAAATTATTAAAAAAAAAAAAACT
ATCTCACCGAAATCACAGAGCTTTGAGCATGTCCTCAGCTCCGCTGAAAG
TAAAGGCGCCGCCCTCCTCCAAATTGAGCACCTTAACGACGCCGTTTTCT
GCCAAAAGGGCGTACCTCCTGGACCTAACTCCCAATCCCATGGGCTTGTC
ACTCAAGTCGAGCTCACAGCCAATAGCCTTAGTGAACACCCCGTTCCCAT
CAGACAACAAAAGCACTTCATCGTTGATTCCAAGATTCTCCTTCCAGGCC
TTCATAACGAAGGCGTCGTTCACGGAAATGCAGGCGACAGTGTCGACGCC
TTTGGATTTCAACTCGGCGGATTTCTCGACGAAGCCCGGGAGGTGTTTTT
GGGAGCAGGTGGGGGTGAAGGCGCCGGGGACGGCGAATAGGATTGCTTTT
TTATTGGAGGTGAGGTCGGAGACGGTGATGGTCTGGAGCTCGCCAGCGGA
GTCGAAGTAGGAGAGGGTGGCGTCGGGGAGCTT
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