CX288527

Overview
NameCX288527
Unique NameCX288527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1103..1747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 282.722 bits (722), Expect = 2.614e-90
Identity = 149/175 (85.14%), Postives = 157/175 (89.71%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            LRG LKIAAL+APGFGERKSQYLDDIAILTG TVIR+EVGL+LDK GKEVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK TLDNDEEKVG
Sbjct:  321 LRGTLKIAALRAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLDNDEEKVG 495          

HSP 2 Score: 70.8626 bits (172), Expect = 2.614e-90
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1
Query:  514 KKRLEADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 645
            ++++ ADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+G
Sbjct:  491 EEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFG 534          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 2.859e-89
Identity = 146/175 (83.43%), Postives = 158/175 (90.29%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            LRG+LKIAALKAPGFGERKSQYLDDIAILTGGTVIR+EVGL LDK  KEVLGNA+KVVLTKDTTTIVGDGSTQ+AV+KRV+QI+  IE AEQ+YE+EKL+ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK+TL NDEEKVG
Sbjct:  315 LRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLTLDKADKEVLGNAAKVVLTKDTTTIVGDGSTQEAVNKRVSQIKNQIEAAEQEYEKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLANDEEKVG 489          

HSP 2 Score: 73.9442 bits (180), Expect = 2.859e-89
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1
Query:  514 KKRLEADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 645
            ++++ ADIVKRAL YPLKLIAKNAGVNGSVVSEKVLSSDN KYG
Sbjct:  485 EEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYG 528          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 3.730e-89
Identity = 147/175 (84.00%), Postives = 156/175 (89.14%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            LRG LKIAALKAPGFGERKSQYLDDIAILTG TVIR+EVGL+LDK GKEVLG+A+KVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK  LDNDEEKVG
Sbjct:  321 LRGTLKIAALKAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKAALDNDEEKVG 495          

HSP 2 Score: 70.8626 bits (172), Expect = 3.730e-89
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1
Query:  514 KKRLEADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 645
            ++++ ADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+G
Sbjct:  491 EEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFG 534          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.131e-71
Identity = 140/189 (74.07%), Postives = 160/189 (84.66%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGGRYC*KSSVLPTEI 569
            LRG+LKI A+KAPGFGERK+QYLDDIAILTGGTVIRDEVGL LDK    VLG A+KVVLTK++TTIVGDGSTQ+ V+KRVAQI+ LIE AEQDYE+EKLNERIAKL+GGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL++KVDAIK+TL+NDE+KVG     ++   P ++
Sbjct:  220 LRGSLKICAIKAPGFGERKTQYLDDIAILTGGTVIRDEVGLTLDKADNTVLGTAAKVVLTKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQDYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIVRRALCYPLKL 408          

HSP 2 Score: 71.633 bits (174), Expect = 3.860e-12
Identity = 33/44 (75.00%), Postives = 42/44 (95.45%), Query Frame = 1
Query:  514 KKRLEADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 645
            ++++ A+IV+RALCYPLKLIAKNAGVNGSVV+EKVLS+DN K+G
Sbjct:  390 EQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFKFG 433          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.901e-57
Identity = 114/192 (59.38%), Postives = 143/192 (74.48%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGGRYC*KSSVLPTEINCQ 578
            LRG LK+ A+KAPGFGER+S YL+DIAILTGGTV+ DE+G++L++    VLG A+K+ +TK+ TT+VGDGST   V+ RV QIR L    +QDYEREKL ERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNAT+AA          CTLLRLS KVD IK  + + E+++G     ++   P ++  Q
Sbjct:  151 LRGTLKVVAIKAPGFGERRSSYLEDIAILTGGTVVGDEMGVSLEQATDAVLGTAAKITITKERTTVVGDGSTAADVAARVKQIRNLQMQTDQDYEREKLQERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATRAAVEEGVVPGGGCTLLRLSEKVDVIKRRMTDPEQQMGADIIKRALCYPIKLIAQ 342          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.619e-56
Identity = 98/174 (56.32%), Postives = 131/174 (75.29%), Query Frame = 3
Query:    6 RGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            RG L +AA+KAPGFG+R+   L DIAILTGG +I +EVGL+L+ V  +++G   K+ + KD TTIV DG T + V KR+AQIR  +  ++ DY++EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TL+ LS+KV+ +K +L+N+EEK+G
Sbjct:  266 RGVLNVAAVKAPGFGDRRKAMLQDIAILTGGQLISEEVGLSLEMVDLDMMGIGRKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIG 439          

HSP 2 Score: 44.2838 bits (103), Expect = 1.619e-56
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1
Query:  514 KKRLEADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD 630
            ++++ ADIV+RAL  PL  IA N+GV GSV+ EKV S+D
Sbjct:  435 EEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTD 473          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 4.243e-54
Identity = 97/174 (55.75%), Postives = 125/174 (71.84%), Query Frame = 3
Query:    6 RGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            RG L +AA+KAPGFGER+   L DIAILT G +I +E+GL+LD    E LG A K+ + KD TTIV   +T+  + KR+AQIR  +E  + +Y+ EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+SKVD IK+  D +EEK+G
Sbjct:  266 RGVLSVAAIKAPGFGERRKALLQDIAILTDGQLISEEIGLSLDTASLEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIG 438          

HSP 2 Score: 43.5134 bits (101), Expect = 4.243e-54
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1
Query:  514 KKRLEADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD 630
            ++++ ADIVKRAL  PL+ IA NAGV GSV+  +V  SD
Sbjct:  434 EEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSD 472          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.225e-53
Identity = 97/174 (55.75%), Postives = 125/174 (71.84%), Query Frame = 3
Query:    6 RGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            RG L +AA+KAPGFGER+   L DIAILT G +I +E+GL+LD    E LG A K+ + KD TTIV   +T+  + KR+AQIR  +E  + +Y+ EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+SKVD IK+  D +EEK+G
Sbjct:  266 RGVLSVAAIKAPGFGERRKALLQDIAILTDGQLISEEIGLSLDTASLEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIG 438          

HSP 2 Score: 41.9726 bits (97), Expect = 1.225e-53
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1
Query:  514 KKRLEADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD 630
            ++++ ADIVKRAL  PL+ IA NAG  GSV+  +V  SD
Sbjct:  434 EEKIGADIVKRALEAPLRQIADNAGAEGSVIVSRVKDSD 472          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: RUBC_CHLRE (RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.418e-53
Identity = 107/156 (68.59%), Postives = 126/156 (80.77%), Query Frame = 3
Query:   60 SQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            S YL+DIAILTGGTV++DE+G+ L+K  +EVLG A+KV ++K+ TTIVGDG TQ  V  RV QIR L    EQ+YE+EKLNERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNATKAA          CTLLRLS KVD+IKETL N+E+K+G
Sbjct:    1 SSYLEDIAILTGGTVVKDELGITLEKATEEVLGLAAKVSISKEATTIVGDGRTQQQVEGRVKQIRNLAAETEQEYEKEKLNERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVIGGGCTLLRLSQKVDSIKETLSNEEQKMG 156          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 8.518e-52
Identity = 96/172 (55.81%), Postives = 124/172 (72.09%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEE 518
            LRG L   A+KAPGFG+R+   L DIA+LTGG VI +++GL L+ V  ++LG A KV +TKD TTIV     + AV KR+AQI   +E+ + D++REKL ER+AKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TLL L+ K+DAIK  L +DE+
Sbjct:  266 LRGVLNCVAVKAPGFGDRRKAMLQDIAVLTGGDVISEDIGLKLENVTIDMLGKARKVTITKDKTTIVAGTDNKAAVEKRIAQIHKQMEDTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLLHLTKKIDAIKAGLADDEK 437          

HSP 2 Score: 39.2762 bits (90), Expect = 8.518e-52
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1
Query:  529 ADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD 630
            AD++ RAL  PL+ IA NAGV GSV+++KV   D
Sbjct:  440 ADLIARALEAPLRQIADNAGVEGSVIAQKVRELD 473          
The following BLAST results are available for this feature:
BLAST of CX288527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_ARATH2.614e-9085.14RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA2.859e-8983.43RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA3.730e-8984.00RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE2.131e-7174.07RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_CHLRE3.901e-5759.38RuBisCO large subunit-binding protein subunit beta... [more]
CH601_TRIEI1.619e-5656.3260 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH602_ANAVT4.243e-5455.7560 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH602_ANASP1.225e-5355.7560 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
RUBC_CHLRE3.418e-5368.59RuBisCO large subunit-binding protein subunit beta... [more]
CH602_GLOVI8.518e-5255.8160 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]

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Properties
Property NameValue
Genbank descriptionC02001D10SK IF1 Citrus clementina cDNA clone C02001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288527 ID=CX288527; Name=CX288527; organism=Citrus clementina; type=EST; length=646bp
AGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGA
GAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAAC
TGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGG
TCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATT
GTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAAT
CAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTA
ATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGA
GCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGC
TCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCG
GATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACC
CTTGATAATGATGAAGAAAAGGTTGGAGGCAGATATTGTTAAAAGAGCTC
TGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTGTTAATGGAAGT
GTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATGGAT
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