CX288593

Overview
NameCX288593
Unique NameCX288593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length442
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6260 contig Ccv1_Contig6260:146..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288593 vs. ExPASy Swiss-Prot
Match: U566_XENLA (UPF0566 protein OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.679e-22
Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = 2
Query:    2 LLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQDRCFFHPLSNDMSISLNTNDLDKFLK 439
            LLA L +L I     EHP V TVE    +V ++GG  SKNLFLKDKK +  ++VS L D +V++  L+++L LG G LR A E +MLE LKV  G  TP AL  +   DV  +LD  F     +R +FHP++N  ++ +   +   FLK
Sbjct:    9 LLAYLHELDIRPVCAEHPEVFTVEEMMPHVQHLGGAHSKNLFLKDKKKKGLWLVSVLHDRQVNLNDLAKKLNLGSGNLRFADEASMLEKLKVGQGCATPLALFCDRG-DVQFVLDAQFLEGGYERVYFHPMTNAATLGMTPQEFVTFLK 156          
BLAST of CX288593 vs. ExPASy Swiss-Prot
Match: U566_BOVIN (UPF0566 protein OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.421e-21
Identity = 58/147 (39.46%), Postives = 87/147 (59.18%), Query Frame = 2
Query:   11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQDRCFFHPLSNDMSISLNTNDLDKFLKS 442
            RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D ++++  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     ++ +FHP++N  ++ L+  D   F+K+
Sbjct:   13 RLAALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQINLNDLAKQLGVGSGNLRFADEAAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLTFVKN 158          
BLAST of CX288593 vs. ExPASy Swiss-Prot
Match: U566_HUMAN (UPF0566 protein OS=Homo sapiens PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.856e-21
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 2
Query:   11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQDRCFFHPLSNDMSISLNTNDLDKFLK 439
            RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D ++++  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     ++ +FHP++N  ++ L+  D   F+K
Sbjct:   13 RLGALAIHTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHDRQINLNELAKQLGVGSGNLRFADETAMLEKLKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLTFVK 157          
BLAST of CX288593 vs. ExPASy Swiss-Prot
Match: U566_MOUSE (UPF0566 protein OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.203e-20
Identity = 56/147 (38.10%), Postives = 86/147 (58.50%), Query Frame = 2
Query:   11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQDRCFFHPLSNDMSISLNTNDLDKFLKS 442
            RL  L I     EHP V T+E    ++ ++ G  SKNLFLKDKK + +++V+ L D ++++  L ++LG+G G LR A E  MLE LKV  G  TP +L  +   DV  +LD  F     ++ +FHP++N  ++ L+  D   F+K+
Sbjct:   13 RLGALAIRTEVVEHPEVFTIEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHDRQINLNDLGKQLGVGSGNLRFADETAMLEKLKVGQGCATPLSLFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLIFVKA 158          
BLAST of CX288593 vs. ExPASy Swiss-Prot
Match: U566_DANRE (UPF0566 protein OS=Danio rerio GN=zgc:64201 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.602e-19
Identity = 58/146 (39.73%), Postives = 83/146 (56.85%), Query Frame = 2
Query:   14 LKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDK----GFKAQDRCFFHPLSNDMSISLNTNDLDKFLK 439
            LK L IE +  EHP V TVE    +V ++ G ++KNLFLKDKK R ++V    D  + +  LS+R  LG   LR+A E  +LE L+V  G VTP AL  ++ R V  +LD+    G      C  HP++N  ++ +   DL +FL+
Sbjct:   31 LKRLNIETTCIEHPEVFTVEEMMPHVSHLSGVVTKNLFLKDKKRRVFLVCVRHDRPLALGELSRR--LGAPNLRLAEERLLLEKLRVRQGCVTPLALFLDTERSVTAVLDRELTHGGHTHIHC--HPMTNSATMGITPADLLRFLE 172          
The following BLAST results are available for this feature:
BLAST of CX288593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
U566_XENLA1.679e-2242.95UPF0566 protein OS=Xenopus laevis PE=2 SV=1[more]
U566_BOVIN1.421e-2139.46UPF0566 protein OS=Bos taurus PE=2 SV=1[more]
U566_HUMAN1.856e-2139.73UPF0566 protein OS=Homo sapiens PE=3 SV=3[more]
U566_MOUSE1.203e-2038.10UPF0566 protein OS=Mus musculus PE=2 SV=1[more]
U566_DANRE6.602e-1939.73UPF0566 protein OS=Danio rerio GN=zgc:64201 PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionC02002B07SK IF1 Citrus clementina cDNA clone C02002B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288593 ID=CX288593; Name=CX288593; organism=Citrus clementina; type=EST; length=442bp
GTTGCTTGCTCGATTAAAGGATCTTCAAATTGAATTTTCTCAATATGAGC
ACCCTGCTGTTATGACAGTTGAAGCTCAGGCAAAGTATGTTGGGAACATA
GGAGGCGGACTCAGTAAAAATTTGTTCTTGAAGGACAAGAAACATAGGTT
CTATATTGTTTCTGCATTGGCAGATACAAAAGTAGATATGAAAGTTTTAT
CTCAAAGACTTGGTCTGGGAAAGGGAGGCTTGAGGATGGCTCCTGAGGAG
ACAATGCTTGAAATACTTAAGGTGCCGTTGGGAAGCGTTACTCCATTTGC
ACTGGTGAATGAATCTGCACGAGATGTTGCACTGTTGTTGGATAAAGGAT
TCAAAGCTCAGGATCGATGCTTCTTCCACCCATTGTCCAATGACATGTCA
ATCTCTCTTAACACCAATGATCTTGACAAGTTTCTCAAATCA
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