CX288597

Overview
NameCX288597
Unique NameCX288597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 3.212e-91
Identity = 144/169 (85.21%), Postives = 159/169 (94.08%), Query Frame = 3
Query:    3 KEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL 509
            K+EF+++P LRKAIIYGYGPFR WMSIAHWL+WHFDL KFRP+EV RVKISLACVFAF+AIGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFTMVHHTAP+IPFK   EWN AQAQLNGTVHCDYPKWIEILCH+INVHIPHHISPRIPSYNL+AAHKS+Q+NWG+YL
Sbjct:  222 KDEFESTPLLRKAIIYGYGPFRCWMSIAHWLMWHFDLKKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPYIPFKYSEEWNRAQAQLNGTVHCDYPKWIEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGQYL 390          
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 3.552e-90
Identity = 140/167 (83.83%), Postives = 156/167 (93.41%), Query Frame = 3
Query:    6 EEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKY 506
            EEFD+SP LRKAII+GYGP RPW+SIAHW+ WHF+L KFRP+EV RVKISLACVFAFMA+GWPLI+ K G+ GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK  +EWNAAQAQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY
Sbjct:  224 EEFDSSPVLRKAIIFGYGPIRPWLSIAHWVNWHFNLRKFRPSEVNRVKISLACVFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHQSIQENWGKY 390          
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 8.748e-89
Identity = 138/167 (82.63%), Postives = 155/167 (92.81%), Query Frame = 3
Query:    6 EEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKY 506
            EEF++SP +RKAII+GYGP RPW+SIAHW+ WHF+L KFR +EV RVKISLACVFAFMA+GWPLI+ K GI GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK  +EWNAAQAQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY
Sbjct:  229 EEFESSPVMRKAIIFGYGPIRPWLSIAHWVNWHFNLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKY 395          
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 3.014e-81
Identity = 130/169 (76.92%), Postives = 150/169 (88.76%), Query Frame = 3
Query:    3 KEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL 509
            KE+ ++SP LRKA+IY YGP R WMSIAHWL  HF+L  FR +EVKR  ISLA VFAFM IGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFT+VHHTAPHIPFKS  EWNAAQAQL+GTVHCDYP+WIEILCH+I+VHIPHHISP+IPSYNL+AA++S+ +NWG+YL
Sbjct:  228 KEDIESSPGLRKALIYAYGPLRTWMSIAHWLKVHFNLKDFRQSEVKRATISLAAVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFTIVHHTAPHIPFKSSKEWNAAQAQLSGTVHCDYPRWIEILCHDISVHIPHHISPKIPSYNLRAANQSLNENWGEYL 396          
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.723e-56
Identity = 94/169 (55.62%), Postives = 124/169 (73.37%), Query Frame = 3
Query:    6 EEFDTSPFLRKAIIYGY-GPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL 509
            E F  SP + +       GPF    SI HW + HF LS F   +  +VK+S+A VF F AI +P +++ TG+ G++K+WLMPWL YHFWMSTFT+VHHT P I F+   +W+AA+AQLNGTVHCDYP+W+E+LCH+INVHIPHH+S  IPSYNL+ AH S+++NWG +L
Sbjct:  148 EAFQASPAIVRLFYRAIRGPFWWTGSIFHWSLMHFKLSNFAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFTIVHHTIPEIRFRPAADWSAAEAQLNGTVHCDYPRWVEVLCHDINVHIPHHLSVAIPSYNLRLAHGSLKENWGPFL 316          
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.048e-41
Identity = 76/171 (44.44%), Postives = 111/171 (64.91%), Query Frame = 3
Query:    3 KEEFDTSPFLRKAIIYGYGPFRPWM--SIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL 509
            KEE+  +    + + Y     R W   SI HW   HFD +KF   + ++VK S   V    AI +P ++L  G+ G++K+W++PWL +HFWMSTFT++HHT   IPF+ P +W+ A++QL+GTVHC+Y +W E LCH+INVHIPHH++  IP YNL+      ++  G+YL
Sbjct:  146 KEEYQNAGKFMQ-VTYDLFRGRAWWIGSILHWASIHFDWTKFEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVIPWLVFHFWMSTFTLLHHTIADIPFREPEQWHEAESQLSGTVHCNYSRWGEFLCHDINVHIPHHVTTAIPWYNLRTPTPVYRKIGGEYL 315          
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.294e-11
Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 3
Query:   99 WHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPH--IPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKY 506
            +H D   F PNE K V  S  C  A +A+   L  +  G    +K + +P+LG   W+   T +HH      +P+    EW+  +  L  T+  DY  WI  + H+I  H+ HH+ P+IP Y+L  A ++ +   GKY
Sbjct:  264 FHPDSDLFVPNEKKDVITSTVCWTAMLALLVGLSFV-IGPVQLLKLYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDYG-WINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKY 398          
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.324e-11
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  102 HFDLSK--FRPNEVKRVKISLACVFAFMA--IGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPH--IPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKY 506
            HFD S   F PNE K V  S AC  A +   +G   +M   G    +K + +P++ +  W+   T +HH      +P+    EW+  +  L  T+  DY  WI  + H+I  H+ HH+ P+IP Y+L  A ++ +  +GKY
Sbjct:  267 HFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVM---GPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDYG-WINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVFGKY 402          
The following BLAST results are available for this feature:
BLAST of CX288597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
FAD6C_SOYBN3.212e-9185.21Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_BRANA3.552e-9083.83Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_ARATH8.748e-8982.63Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_SPIOL3.014e-8176.92Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
DESA_SYNY35.723e-5655.62Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
DESA_SPIPL1.048e-4144.44Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
FAD3C_SESIN4.294e-1132.61Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_SOYBN7.324e-1132.62Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
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Properties
Property NameValue
Genbank descriptionC02002B11SK IF1 Citrus clementina cDNA clone C02002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288597 ID=CX288597; Name=CX288597; organism=Citrus clementina; type=EST; length=509bp
GGAAAGAGGAGTTTGACACATCTCCCTTCTTGCGCAAAGCAATAATATAT
GGATATGGCCCTTTTCGACCTTGGATGTCAATAGCTCACTGGTTGATCTG
GCACTTTGATTTGAGCAAGTTCAGGCCAAATGAAGTTAAAAGGGTGAAGA
TAAGTTTGGCATGTGTTTTTGCATTTATGGCAATTGGATGGCCTCTAATT
ATGTTGAAGACAGGAATTGCGGGATGGATAAAGTACTGGTTGATGCCATG
GTTGGGCTATCACTTCTGGATGAGTACTTTCACTATGGTGCATCATACGG
CTCCTCACATTCCTTTCAAATCTCCGAATGAGTGGAATGCAGCCCAAGCC
CAGCTTAATGGGACAGTTCATTGTGATTACCCTAAATGGATCGAGATTCT
CTGCCACAACATCAATGTCCACATCCCCCATCATATCTCGCCGAGAATAC
CAAGCTATAATTTGAAGGCAGCTCATAAATCTATCCAACAGAATTGGGGG
AAGTATTTG
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