CX288597
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 3.212e-91 Identity = 144/169 (85.21%), Postives = 159/169 (94.08%), Query Frame = 3 Query: 3 KEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL 509 K+EF+++P LRKAIIYGYGPFR WMSIAHWL+WHFDL KFRP+EV RVKISLACVFAF+AIGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFTMVHHTAP+IPFK EWN AQAQLNGTVHCDYPKWIEILCH+INVHIPHHISPRIPSYNL+AAHKS+Q+NWG+YL Sbjct: 222 KDEFESTPLLRKAIIYGYGPFRCWMSIAHWLMWHFDLKKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPYIPFKYSEEWNRAQAQLNGTVHCDYPKWIEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGQYL 390
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 3.552e-90 Identity = 140/167 (83.83%), Postives = 156/167 (93.41%), Query Frame = 3 Query: 6 EEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKY 506 EEFD+SP LRKAII+GYGP RPW+SIAHW+ WHF+L KFRP+EV RVKISLACVFAFMA+GWPLI+ K G+ GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK +EWNAAQAQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY Sbjct: 224 EEFDSSPVLRKAIIFGYGPIRPWLSIAHWVNWHFNLRKFRPSEVNRVKISLACVFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHQSIQENWGKY 390
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2) HSP 1 Score: 325.479 bits (833), Expect = 8.748e-89 Identity = 138/167 (82.63%), Postives = 155/167 (92.81%), Query Frame = 3 Query: 6 EEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKY 506 EEF++SP +RKAII+GYGP RPW+SIAHW+ WHF+L KFR +EV RVKISLACVFAFMA+GWPLI+ K GI GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK +EWNAAQAQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY Sbjct: 229 EEFESSPVMRKAIIFGYGPIRPWLSIAHWVNWHFNLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKY 395
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 3.014e-81 Identity = 130/169 (76.92%), Postives = 150/169 (88.76%), Query Frame = 3 Query: 3 KEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL 509 KE+ ++SP LRKA+IY YGP R WMSIAHWL HF+L FR +EVKR ISLA VFAFM IGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFT+VHHTAPHIPFKS EWNAAQAQL+GTVHCDYP+WIEILCH+I+VHIPHHISP+IPSYNL+AA++S+ +NWG+YL Sbjct: 228 KEDIESSPGLRKALIYAYGPLRTWMSIAHWLKVHFNLKDFRQSEVKRATISLAAVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFTIVHHTAPHIPFKSSKEWNAAQAQLSGTVHCDYPRWIEILCHDISVHIPHHISPKIPSYNLRAANQSLNENWGEYL 396
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 5.723e-56 Identity = 94/169 (55.62%), Postives = 124/169 (73.37%), Query Frame = 3 Query: 6 EEFDTSPFLRKAIIYGY-GPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL 509 E F SP + + GPF SI HW + HF LS F + +VK+S+A VF F AI +P +++ TG+ G++K+WLMPWL YHFWMSTFT+VHHT P I F+ +W+AA+AQLNGTVHCDYP+W+E+LCH+INVHIPHH+S IPSYNL+ AH S+++NWG +L Sbjct: 148 EAFQASPAIVRLFYRAIRGPFWWTGSIFHWSLMHFKLSNFAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFTIVHHTIPEIRFRPAADWSAAEAQLNGTVHCDYPRWVEVLCHDINVHIPHHLSVAIPSYNLRLAHGSLKENWGPFL 316
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.048e-41 Identity = 76/171 (44.44%), Postives = 111/171 (64.91%), Query Frame = 3 Query: 3 KEEFDTSPFLRKAIIYGYGPFRPWM--SIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL 509 KEE+ + + + Y R W SI HW HFD +KF + ++VK S V AI +P ++L G+ G++K+W++PWL +HFWMSTFT++HHT IPF+ P +W+ A++QL+GTVHC+Y +W E LCH+INVHIPHH++ IP YNL+ ++ G+YL Sbjct: 146 KEEYQNAGKFMQ-VTYDLFRGRAWWIGSILHWASIHFDWTKFEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVIPWLVFHFWMSTFTLLHHTIADIPFREPEQWHEAESQLSGTVHCNYSRWGEFLCHDINVHIPHHVTTAIPWYNLRTPTPVYRKIGGEYL 315
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.294e-11 Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 3 Query: 99 WHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPH--IPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKY 506 +H D F PNE K V S C A +A+ L + G +K + +P+LG W+ T +HH +P+ EW+ + L T+ DY WI + H+I H+ HH+ P+IP Y+L A ++ + GKY Sbjct: 264 FHPDSDLFVPNEKKDVITSTVCWTAMLALLVGLSFV-IGPVQLLKLYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDYG-WINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKY 398
BLAST of CX288597 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 7.324e-11 Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 3 Query: 102 HFDLSK--FRPNEVKRVKISLACVFAFMA--IGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPH--IPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKY 506 HFD S F PNE K V S AC A + +G +M G +K + +P++ + W+ T +HH +P+ EW+ + L T+ DY WI + H+I H+ HH+ P+IP Y+L A ++ + +GKY Sbjct: 267 HFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVM---GPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDYG-WINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVFGKY 402 The following BLAST results are available for this feature:
BLAST of CX288597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288597 ID=CX288597; Name=CX288597; organism=Citrus clementina; type=EST; length=509bpback to top |