CX288601

Overview
NameCX288601
Unique NameCX288601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig307 contig Ccv1_Contig307:339..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288601 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.545e-27
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    7 SCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 201
            SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  277 SCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CX288601 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 3.920e-26
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 GNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 177
            G  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  386 GKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CX288601 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.119e-26
Identity = 43/66 (65.15%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    1 GNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 198
            G  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  394 GKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CX288601 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.884e-20
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    4 NSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 174
            N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  406 NLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CX288601 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.825e-15
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    4 NSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 177
            N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  415 NHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CX288601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CYSPL_SOLLC3.545e-2775.38Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYA_ORYSJ3.920e-2677.97Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH5.119e-2665.15Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYB_ORYSJ1.884e-2068.42Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ1.825e-1550.00Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionC02002C04SK IF1 Citrus clementina cDNA clone C02002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288601 ID=CX288601; Name=CX288601; organism=Citrus clementina; type=EST; length=522bp
GGTAACTCTTGCTTTGCATGGGGATGCTGCCCGCTTGAGGCTGCCACCTG
CTGTGATGACCACTATAGCTGCTGCCCACATGACTATCCCATCTGTAATG
TTCGTGCTGGGACCTGCTTGATGAGCAAGGACAACCCATTGGGAGTGAGG
GCATTACGACGCACCCCTGCTAAACCTTACTGGGCTCATGGAAATCAAGG
TGGAAGTAGCAGTGCTTAATTATAGTTGGCACTGTAAGAGCAGTGGAAGG
CCGAAGGGAGGATGAAAATATTCGTGCTTGTGAATGAGTTTCTCCCCGGC
CTTAGTTCATTCTACTGCATTTCATTCCAAACGTTAATGTACCGGCAGGT
GGATGGTCTGTTAAATATTTATTCGGACGTTGGTTTGGTATATAGCGTTG
TAAGTTATCTATCTGCGTTGAATCTGAACAATGCACAAACAAATTGTTGT
TATCTATTTCCAATGTCCTCTACCAAATCCCTGGCGTCATTCAGCGGAGG
CTTTTATGAATTGATATTTAAC
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