CX288634

Overview
NameCX288634
Unique NameCX288634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6652 contig Ccv1_Contig6652:971..1516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYEP_DROME (Bifunctional aminoacyl-tRNA synthetase OS=Drosophila melanogaster GN=Aats-glupro PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.826e-31
Identity = 49/122 (40.16%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKA 523
            G+R   D+ DNYSPGWK++HWE+KGVPL +E+GPKDL   Q+ AVRRD   KI +P+                S+   A++   +  + V  W +F   L Q+ ++LAP+C E   E  +KA
Sbjct: 1538 GVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTVEKITIPLADVEKKIPALLETIHESMLNKAQEDMTSHTKKVTNWTDFCGFLEQKNILLAPFCGEISCEDKIKA 1659          

HSP 2 Score: 51.6026 bits (122), Expect = 2.826e-31
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 VMVMVHGDDKGLMLPPKVASVQVIDIP----VPYKDADTQGIFDACTATVEKLV*GRYSC 168
            VM+MVH D++GL+LPP VA +Q I +P    V  KD +   + DAC A  ++LV G   C
Sbjct: 1482 VMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGGGVRC 1541          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: YHY6_SCHPO (Putative prolyl-tRNA synthetase C19C7.06 OS=Schizosaccharomyces pombe GN=SPBC19C7.06 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.305e-29
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 2
Query:  155 AGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVK 520
            A IR  +D +  Y+PG+K+SHWEMKGVPL +E GP D   +QV AVRRD   KI +P+ +              +++  AK  RDA +  VK W +FV AL ++ +++ PWC+  E EK++K
Sbjct:  534 ADIRTEAD-LRAYTPGYKFSHWEMKGVPLRLEYGPNDAKKNQVTAVRRDTFEKIPVPLNNLEKGVSDLLAKIQTNMYETAKAERDAHVVKVKEWADFVPALNKKNIVMIPWCNTTECEKEIK 654          

HSP 2 Score: 41.2022 bits (95), Expect = 3.305e-29
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 1
Query:    1 VMVMVHGDDKGLMLPPKVASVQVIDIP 81
            V VMVHGDDKGL LPP +A VQ + +P
Sbjct:  479 VAVMVHGDDKGLKLPPAIALVQSVVVP 505          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: YHI0_YEAST (Putative prolyl-tRNA synthetase YHR020W OS=Saccharomyces cerevisiae GN=YHR020W PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.625e-28
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 2
Query:  152 EAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVK 520
            + GIRA  D+ DNY+PGWK+S +E+KG+P+ IE+GPKD+  +QV  VRR++  K  +                   LF  AK+  D    IV  W  FV AL ++ +ILAPWC   E E+D+K
Sbjct:  508 KVGIRAFGDYNDNYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDELEARIPEILEEMQGDLFKKAKELFDTHRVIVNEWSGFVPALNKKNVILAPWCGVMECEEDIK 630          

HSP 2 Score: 40.0466 bits (92), Expect = 4.625e-28
Identity = 16/28 (57.14%), Postives = 23/28 (82.14%), Query Frame = 1
Query:    1 VMVMVHGDDKGLMLPPKVASVQVIDIPV 84
            VMVM+H D+KGL++PP+V+  Q + IPV
Sbjct:  454 VMVMIHSDNKGLVIPPRVSQFQSVVIPV 481          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYEP_MOUSE (Bifunctional aminoacyl-tRNA synthetase OS=Mus musculus GN=Eprs PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.966e-25
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = 2
Query:  155 AGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKART 529
            A IR   D  DNYSPGWK++HWE+KGVP+ +E+GP+D+ + Q  AVRRD G K+ +                  +LF  A +     + +  T ++F + L   K+   P+C E + E  +K  T
Sbjct: 1337 ANIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTIAEKEAEAKLEKVLEDIQLNLFTRASEDLKTHMVVSNTLEDFQKVLDAGKVAQIPFCGEIDCEDWIKKMT 1461          

HSP 2 Score: 46.9802 bits (110), Expect = 1.966e-25
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 VMVMVHGDDKGLMLPPKVASVQVIDIPVPYKDA----DTQGIFDACTATVEKLV 150
            VMVMVHGD+ GL+LPP+VASVQV+ IP    +A    D + +   C     +L+
Sbjct: 1282 VMVMVHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDREALMAKCNEYRRRLL 1335          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYEP_HUMAN (Bifunctional aminoacyl-tRNA synthetase OS=Homo sapiens GN=EPRS PE=1 SV=5)

HSP 1 Score: 92.0485 bits (227), Expect = 3.329e-25
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  161 IRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKART 529
            IR  +D  DNYSPGWK++HWE+KGVP+ +E+GP+D+ + Q  AVRRD G K+ +                  +LF  A +     + +  T ++F + L   K++  P+C E + E  +K  T
Sbjct: 1339 IRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDWIKKTT 1461          

HSP 2 Score: 43.1282 bits (100), Expect = 3.329e-25
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    1 VMVMVHGDDKGLMLPPKVASVQVIDIP 81
            VM MVHGD+ GL+LPP+VA VQV+ IP
Sbjct: 1282 VMTMVHGDNMGLVLPPRVACVQVVIIP 1308          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP2_CLOD6 (Prolyl-tRNA synthetase 2 OS=Clostridium difficile (strain 630) GN=proS2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.143e-24
Identity = 45/125 (36.00%), Postives = 65/125 (52.00%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKART 529
            G+    D  DNY+ GWK++ WEMKGVP+ +EIGPKD+ N+Q    RRD   K  +P+                 +F  A++ R+    IV+  DEF +AL ++   I   WC + E E  +K  T
Sbjct:  322 GVAVEVDDRDNYTTGWKFNEWEMKGVPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAICDLFDVIHNDMFEKARKHREDNTSIVENMDEFRKALEEKPGFIKTMWCGDAECEAKIKEET 446          

HSP 2 Score: 41.2022 bits (95), Expect = 6.143e-24
Identity = 16/46 (34.78%), Postives = 29/46 (63.04%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVE 141
            ++M H D++GL+LPP+VA +QV+ +P+  K  +     D   A ++
Sbjct:  274 LIMTHSDNRGLVLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLK 319          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_SYMTH (Prolyl-tRNA synthetase OS=Symbiobacterium thermophilum GN=proS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.040e-23
Identity = 51/134 (38.06%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  155 AGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQI-VKTWDEF------VEALGQ-RKMILAPWCDEEEVEKDVKARTK 532
            AG+R  +D  +  +PGWK++ WEM+GVPL IEIGP+D+ N Q   VRRD G KI +P+                ++FV AK+ RDA   + + T  E        E  G+    +LA WC +   E  VK  TK
Sbjct:  322 AGVRVKADLREE-TPGWKFNEWEMRGVPLRIEIGPRDVDNKQCLMVRRDTGEKIPVPLDEAVERVQALLEEIQRNMFVKAKEFRDAHSHLHINTLAELKAHIARCEETGEIAGFVLAGWCGDAACEAKVKEETK 454          

HSP 2 Score: 44.2838 bits (103), Expect = 1.040e-23
Identity = 18/27 (66.67%), Postives = 24/27 (88.89%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++MVHGDD+GL LPP++A +QVI IPV
Sbjct:  273 LIMVHGDDRGLALPPRLAPIQVIMIPV 299          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_RUBXD (Prolyl-tRNA synthetase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=proS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.292e-23
Identity = 44/128 (34.38%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  152 EAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKARTK 532
            EAG+RA +D  + +SPGWK++  E++GVP+ +E+GPKD+   Q   VRRD G K  +  G+              ++   A+  RD   +  +T++EF E + +++  ++APW   EE E+ +K  TK
Sbjct:  318 EAGLRAEADLDEEHSPGWKFNEHELRGVPVRVELGPKDIEKGQAVLVRRDTGEKEFVGRGAAARRLVELMDEIQQNMLRQAEAFRDENTRRAETYEEFKEIIEEKRGFVVAPWDGTEETEQRIKEETK 445          

HSP 2 Score: 40.4318 bits (93), Expect = 2.292e-23
Identity = 14/27 (51.85%), Postives = 22/27 (81.48%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            +++VHGDD+GL LPPK+A  Q + +P+
Sbjct:  270 LILVHGDDRGLRLPPKLAPTQAVVVPI 296          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_ENCCU (Prolyl-tRNA synthetase OS=Encephalitozoon cuniculi GN=ECU02_1360 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.875e-23
Identity = 48/142 (33.80%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  104 LKEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKART 529
            L+ ++      LKN   +G+R + D   N + G+K++HWE++GVPL +EIG KD+A+ +   VRRD  AK  + +                 +   A   RD+ I  VK+++EF+ AL  + +I+APWC   E E ++K+R+
Sbjct:  334 LRAYINGVCVQLKN---SGVRVHLDDRSNVTAGFKFNHWEIRGVPLRLEIGFKDMASSEACLVRRDTRAKKQVSVEGIAHTVMEEIDTMHNDMLARATSERDSRISYVKSFEEFMSALDNKNIIMAPWCGISECEIEIKSRS 472          

HSP 2 Score: 35.4242 bits (80), Expect = 3.875e-23
Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 1
Query:    1 VMVMVHGDDKGLMLPPKVASVQVIDIP 81
            +  M+H D+ GL+LPP+VA  QV+ +P
Sbjct:  293 IAAMIHSDNLGLVLPPRVAMTQVVIVP 319          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CENSY (Prolyl-tRNA synthetase OS=Cenarchaeum symbiosum GN=proS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.450e-22
Identity = 40/130 (30.77%), Postives = 63/130 (48.46%), Query Frame = 2
Query:  152 EAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEM 541
            +AGIRA +D  +  +PG+K+  WEM+GVP+ IEIGP+DL +       R +G K  +P+                 +  AAK+  D  I    ++    +A+     + A WC   E E+ VK  T  ++
Sbjct:  318 KAGIRARTDKREELTPGFKFHDWEMRGVPVRIEIGPRDLKDGSAVLATRHDGKKSKVPLDGAAVNIEEELCRVQTEMLGAAKRALDGMIHDASSYGALTKAVEGGGFVRAAWCGGLECEEKVKEETGADI 447          

HSP 2 Score: 50.8322 bits (120), Expect = 2.450e-22
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKLV 150
            M+MVHGDDKGL+LPPKVA +QV+ IP+ Y   +   +  A      +L+
Sbjct:  269 MIMVHGDDKGLVLPPKVAPLQVVIIPISYSGEEGAQVLAAAEGMEAELL 317          
The following BLAST results are available for this feature:
BLAST of CX288634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
SYEP_DROME2.826e-3140.16Bifunctional aminoacyl-tRNA synthetase OS=Drosophi... [more]
YHY6_SCHPO3.305e-2941.80Putative prolyl-tRNA synthetase C19C7.06 OS=Schizo... [more]
YHI0_YEAST4.625e-2841.46Putative prolyl-tRNA synthetase YHR020W OS=Sacchar... [more]
SYEP_MOUSE1.966e-2535.20Bifunctional aminoacyl-tRNA synthetase OS=Mus musc... [more]
SYEP_HUMAN3.329e-2534.96Bifunctional aminoacyl-tRNA synthetase OS=Homo sap... [more]
SYP2_CLOD66.143e-2436.00Prolyl-tRNA synthetase 2 OS=Clostridium difficile ... [more]
SYP_SYMTH1.040e-2338.06Prolyl-tRNA synthetase OS=Symbiobacterium thermoph... [more]
SYP_RUBXD2.292e-2334.38Prolyl-tRNA synthetase OS=Rubrobacter xylanophilus... [more]
SYP_ENCCU3.875e-2333.80Prolyl-tRNA synthetase OS=Encephalitozoon cuniculi... [more]
SYP_CENSY2.450e-2230.77Prolyl-tRNA synthetase OS=Cenarchaeum symbiosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC02002F06SK IF1 Citrus clementina cDNA clone C02002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288634 ID=CX288634; Name=CX288634; organism=Citrus clementina; type=EST; length=547bp
GTCATGGTGATGGTTCATGGGGATGACAAGGGCTTGATGCTGCCACCCAA
AGTTGCATCTGTGCAAGTAATTGACATTCCTGTGCCTTACAAAGATGCTG
ATACTCAAGGAATTTTTGATGCATGCACTGCAACTGTTGAAAAATTAGTG
TGAGGCAGGTATTCGTGCTAATTCTGACTTTATAGACAACTACTCACCTG
GATGGAAGTACTCACACTGGGAAATGAAAGGTGTCCCCCTTATGATTGAA
ATAGGACCAAAAGACTTGGCAAATGATCAGGTACGTGCTGTTCGCCGTGA
CAACGGAGCAAAAATTGATCTGCCTATGGGCTCCTTGGTCGAGAGAGTAA
AAGAACTTCTTGAGGAGGTTCAAGAAAGCTTGTTTGTTGCTGCAAAACAA
AGACGAGATGCTTGCATTCAAATTGTAAAAACTTGGGATGAATTTGTGGA
GGCTCTTGGCCAAAGGAAAATGATCTTGGCTCCATGGTGTGATGAGGAGG
AGGTGGAGAAAGATGTGAAAGCACGTACCAAGGGTGAGATGGGAGCA
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