CX288653

Overview
NameCX288653
Unique NameCX288653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13222 contig Ccv1_Contig13222:563..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: MAM3_YEAST (Protein MAM3 OS=Saccharomyces cerevisiae GN=MAM3 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.109e-24
Identity = 60/169 (35.50%), Postives = 93/169 (55.03%), Query Frame = 2
Query:    8 LFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 511
            L +P++YPI+ +LD MLG+ H  + +++ LKT V  H     +   LT DE TII+  L+L  K  ++ MTPI   F+              I   G SR+P++  N P N IG++LV+ L+S D  D +P+    +  +P  S +    +ILN FQ+G +H+ VV K+
Sbjct:  192 LMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVER--LTKDEVTIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNFIGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKE 358          
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: CNNM2_RAT (Metal transporter CNNM2 OS=Rattus norvegicus GN=Cnnm2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 65/183 (35.52%), Postives = 96/183 (52.46%), Query Frame = 2
Query:    2 LCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 541
            + + FP SYP+SK+LD +LG+    +  R +L   +           DL  +E  II GALEL  KT +D MTP+   F             + IM  G++R+PV+ G  +NI+ L+ VK+L  VD  D  PL+   K     +  V  D  L  +L EF+KG SH+A+V + +N + EG+ F
Sbjct:  383 MMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV----TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQR-VNNEGEGDPF 560          
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: CNNM2_MOUSE (Metal transporter CNNM2 OS=Mus musculus GN=Cnnm2 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 65/183 (35.52%), Postives = 96/183 (52.46%), Query Frame = 2
Query:    2 LCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 541
            + + FP SYP+SK+LD +LG+    +  R +L   +           DL  +E  II GALEL  KT +D MTP+   F             + IM  G++R+PV+ G  +NI+ L+ VK+L  VD  D  PL+   K     +  V  D  L  +L EF+KG SH+A+V + +N + EG+ F
Sbjct:  383 MMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV----TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQR-VNNEGEGDPF 560          
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: CNNM2_HUMAN (Metal transporter CNNM2 OS=Homo sapiens GN=CNNM2 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 65/183 (35.52%), Postives = 96/183 (52.46%), Query Frame = 2
Query:    2 LCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 541
            + + FP SYP+SK+LD +LG+    +  R +L   +           DL  +E  II GALEL  KT +D MTP+   F             + IM  G++R+PV+ G  +NI+ L+ VK+L  VD  D  PL+   K     +  V  D  L  +L EF+KG SH+A+V + +N + EG+ F
Sbjct:  383 MMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV----TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQR-VNNEGEGDPF 560          
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: CNNM4_XENTR (Metal transporter CNNM4 OS=Xenopus tropicalis GN=cnnm4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.698e-21
Identity = 61/183 (33.33%), Postives = 95/183 (51.91%), Query Frame = 2
Query:    2 LCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPL---RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 541
            + L FP++YP+S++LD  LG+    +  R +L   +      +G    +  +E  II GALEL  KT +D MT +   F             ++IM  G++R+PVY    +NI+ ++ VK+L  VD  D  PL    +     +  V  D  L  +L EF+KG SH+A+V K +N + EG+ F
Sbjct:  307 MLLTFPVAYPVSRLLDCALGQEIGTVYNREKLLEMLKVTEPYSG----IVREEMNIIQGALELRTKTVEDVMTKVEDCFMLPSDAVLDFNTMSSIMESGYTRIPVYENERSNIVDILYVKDLAFVDPDDCTPLSTITRFYSHPLHFVFSDTKLDAVLEEFKKGKSHLAIVQK-VNSEGEGDPF 484          
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: CNNM4_RAT (Metal transporter CNNM4 OS=Rattus norvegicus GN=Cnnm4 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.658e-20
Identity = 62/183 (33.88%), Postives = 95/183 (51.91%), Query Frame = 2
Query:    2 LCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 541
            + L FP+S+PISK+LD +LG+    +  R +L   +           DL  +E  +I GALEL  KT +D MT +   F             + IM  G++R+PV+    +NI+ ++ VK+L  VD  D  PL+   +     +  V  D  L  +L EF+KG SH+A+V K +N + EG+ F
Sbjct:  308 MLLTFPLSFPISKLLDFVLGQEIRTVYNREKLMEMLKV----TEPYNDLVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMESGYTRIPVFEDEQSNIVDILYVKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFKKGKSHLAIVQK-VNNEGEGDPF 485          
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: CNNM4_MOUSE (Metal transporter CNNM4 OS=Mus musculus GN=Cnnm4 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.658e-20
Identity = 62/183 (33.88%), Postives = 95/183 (51.91%), Query Frame = 2
Query:    2 LCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 541
            + L FP+S+PISK+LD +LG+    +  R +L   +           DL  +E  +I GALEL  KT +D MT +   F             + IM  G++R+PV+    +NI+ ++ VK+L  VD  D  PL+   +     +  V  D  L  +L EF+KG SH+A+V K +N + EG+ F
Sbjct:  307 MLLTFPLSFPISKLLDFVLGQEIRTVYNREKLMEMLKV----TEPYNDLVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMESGYTRIPVFEDEQSNIVDILYVKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFKKGKSHLAIVQK-VNNEGEGDPF 484          
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: CNNM4_HUMAN (Metal transporter CNNM4 OS=Homo sapiens GN=CNNM4 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.658e-20
Identity = 62/183 (33.88%), Postives = 94/183 (51.37%), Query Frame = 2
Query:    2 LCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 541
            + L FP+S+PISK+LD  LG+    +  R +L   +           DL  +E  +I GALEL  KT +D MT +   F             + IM  G++R+PV+    +NI+ ++ VK+L  VD  D  PL+   +     +  V  D  L  +L EF+KG SH+A+V K +N + EG+ F
Sbjct:  310 MLLTFPLSFPISKLLDFFLGQEIRTVYNREKLMEMLKV----TEPYNDLVKEELNMIQGALELRTKTVEDIMTQLQDCFMIRSDAILDFNTMSEIMESGYTRIPVFEDEQSNIVDILYVKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFKKGKSHLAIVQK-VNNEGEGDPF 487          
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: YJ23_SCHPO (Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe GN=SPCC4B3.03c PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.828e-20
Identity = 58/167 (34.73%), Postives = 89/167 (53.29%), Query Frame = 2
Query:    8 LFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGD-LTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYS-GNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 502
            L +PI+YP + ILD  LG+  + + +++ LKT V  H +    G D L  DE TII   L+L EK A+  MTPI   F+              I+  G+SR+PV+  G P + IG++L K L+  D  D  P+ K  +  +P+   +    D+LN  Q+G SH+ ++
Sbjct:  193 LLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLHRD---LGIDKLNQDEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFPHDFIGMLLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDLLNYCQEGKSHMILI 356          
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: CNNM1_MOUSE (Metal transporter CNNM1 OS=Mus musculus GN=Cnnm1 PE=1 SV=4)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 58/180 (32.22%), Postives = 91/180 (50.56%), Query Frame = 2
Query:   14 FPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPT-NIIGLILVKNLLSVDYRDAVPL---RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 541
            FP+ YP+ ++LD  L +  +    R +L   +      A    DL  +E  II GALEL  K  ++ +TP+   F             + I+  G++R+PVY G+   NI+ ++ VK+L  VD  D  PL    +   R +  V  D  L  +L EF+KG SH+A+V + +N + EG+ F
Sbjct:  299 FPVCYPLGRLLDWALPQEISTFYTREKLLETLR----AADPYSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQR-VNNEGEGDPF 473          
The following BLAST results are available for this feature:
BLAST of CX288653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MAM3_YEAST1.109e-2435.50Protein MAM3 OS=Saccharomyces cerevisiae GN=MAM3 P... [more]
CNNM2_RAT1.356e-2235.52Metal transporter CNNM2 OS=Rattus norvegicus GN=Cn... [more]
CNNM2_MOUSE1.356e-2235.52Metal transporter CNNM2 OS=Mus musculus GN=Cnnm2 P... [more]
CNNM2_HUMAN1.356e-2235.52Metal transporter CNNM2 OS=Homo sapiens GN=CNNM2 P... [more]
CNNM4_XENTR5.698e-2133.33Metal transporter CNNM4 OS=Xenopus tropicalis GN=c... [more]
CNNM4_RAT1.658e-2033.88Metal transporter CNNM4 OS=Rattus norvegicus GN=Cn... [more]
CNNM4_MOUSE1.658e-2033.88Metal transporter CNNM4 OS=Mus musculus GN=Cnnm4 P... [more]
CNNM4_HUMAN1.658e-2033.88Metal transporter CNNM4 OS=Homo sapiens GN=CNNM4 P... [more]
YJ23_SCHPO2.828e-2034.73Uncharacterized protein C4B3.03c OS=Schizosaccharo... [more]
CNNM1_MOUSE1.314e-1732.22Metal transporter CNNM1 OS=Mus musculus GN=Cnnm1 P... [more]

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Properties
Property NameValue
Genbank descriptionC02002H02SK IF1 Citrus clementina cDNA clone C02002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288653 ID=CX288653; Name=CX288653; organism=Citrus clementina; type=EST; length=557bp
TCTTTGTTTGTTCTTTCCTATATCTTATCCAATTAGCAAGATTTTGGATT
TGATGCTGGGTAAGGGACATGCAGTTCTTTTAAGGAGGGCAGAGCTAAAG
ACTTTTGTTAACTTTCATGGCAATGAGGCTGGGAAAGGTGGGGATCTAAC
TCATGATGAGACTACTATCATCGCTGGAGCTCTGGAGTTGACTGAAAAAA
CTGCAAAAGATGCCATGACTCCCATATCGAAGGCATTTTCTCTTGATCTG
GATGCAACACTTACTTTGGATACCTTAAATGCCATAATGACCATGGGTCA
TAGTAGAGTTCCTGTTTACTCTGGGAATCCGACAAATATAATTGGCCTCA
TTCTGGTTAAAAATCTTTTATCAGTCGATTATAGAGATGCAGTTCCTTTG
CGGAAAATGATCATACGGAGAATACCACGGGTTTCAGAAGACATGCCTTT
GTATGATATTCTAAATGAATTTCAGAAAGGACATAGCCACATTGCTGTTG
TATATAAGGATCTAAATGAGAAAAAAGAGGGTGAGCTTTTTAAGGACAAT
TGTAAGA
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