CX288654

Overview
NameCX288654
Unique NameCX288654
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9402 contig Ccv1_Contig9402:85..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288654 vs. ExPASy Swiss-Prot
Match: XCT_ARATH (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis thaliana GN=XCT PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.396e-43
Identity = 100/171 (58.48%), Postives = 112/171 (65.50%), Query Frame = 2 
Query:    5 EGYVGTAQDAVRIRRLEKQREAERRXIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIRN-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSRLSFADDFXXXXXXXXXXXXXLKTKRLAQAKLGKDPTVETSFLPDSEREAEEQSER 514
            +GYVGTAQDAVRIRRL+KQREAER+ IQELK+KS S   Q GLLQFG+S+ EIL+TAFKKETVGLVTREEYVEKRVNIRN                                G+SRLSFA+DF               T  L   KLGKDP+VET+FLPDSEREAEEQ+ER
Sbjct:    6 DGYVGTAQDAVRIRRLQKQREAERKKIQELKSKSASGNDQSGLLQFGTSSCEILDTAFKKETVGLVTREEYVEKRVNIRNKFEEEEKEKLQKLQQEEEELQLEKRNKKRKIKGSSRLSFAEDFENGSDEDDGENKSSGTGNLRCGKLGKDPSVETNFLPDSEREAEEQAER 176
[Close]
BLAST of CX288654 vs. ExPASy Swiss-Prot
Match: XCT_ORYSJ (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. japonica GN=XCT PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.721e-42
Identity = 100/170 (58.82%), Postives = 108/170 (63.53%), Query Frame = 2 
Query:    5 EGYVGTAQDAVRIRRLEKQREAERRXIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSRLSFADDFXXXXXXXXXXXXXLKTKRLAQAKLGKDPTVETSFLPDSEREAEEQSER 514
            +GYVGTAQDAV+IRRLEKQREAERR I+ELK KS    GQPGLLQFGSSTSEILETAFKKETVGLVTRE+YVEKRVNIR                                G+ RLSF D+                 K+    KLGKDPTVETSFLPD EREAEEQ+ER
Sbjct:    6 DGYVGTAQDAVKIRRLEKQREAERRKIEELKNKS--SDGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIRTKIEEEEKEKLQKLQQEEEELQMQKRKKRRVRGDPRLSFCDEIENGSDEDEFENQE-PQKKHGPVKLGKDPTVETSFLPDREREAEEQAER 172
[Close]
BLAST of CX288654 vs. ExPASy Swiss-Prot
Match: XCT_ORYSI (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. indica GN=XCT PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.721e-42
Identity = 100/170 (58.82%), Postives = 108/170 (63.53%), Query Frame = 2 
Query:    5 EGYVGTAQDAVRIRRLEKQREAERRXIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSRLSFADDFXXXXXXXXXXXXXLKTKRLAQAKLGKDPTVETSFLPDSEREAEEQSER 514
            +GYVGTAQDAV+IRRLEKQREAERR I+ELK KS    GQPGLLQFGSSTSEILETAFKKETVGLVTRE+YVEKRVNIR                                G+ RLSF D+                 K+    KLGKDPTVETSFLPD EREAEEQ+ER
Sbjct:    6 DGYVGTAQDAVKIRRLEKQREAERRKIEELKNKS--SDGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIRTKIEEEEKEKLQKLQQEEEELQMQKRKKRRVRGDPRLSFCDEIENGSDEDEFENQE-PQKKHGPVKLGKDPTVETSFLPDREREAEEQAER 172
The following BLAST results are available for this feature:
BLAST of CX288654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
XCT_ARATH4.396e-4358.48Protein XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis t... [more]
XCT_ORYSJ3.721e-4258.82Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa ... [more]
XCT_ORYSI3.721e-4258.82Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionC02002H03SK IF1 Citrus clementina cDNA clone C02002H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288654 ID=CX288654; Name=CX288654; organism=Citrus clementina; type=EST; length=516bp
GCACGAGGGGTACGTGGGCACGGCCCAAGACGCGGTGAGGATCCGGAGAC
TCGAGAAGCAAAGAGAAGCCGAGCGTCGCANAATCCAAGAGCTCAAAACG
AAGTCCGTCTCCGACAAGGGCCAGCCCGGTCTCCTCCAGTTTGGTTCAAG
TACCTCCGAGATTCTAGAAACTGCGTTTAAGAAGGAAACCGTAGGTTTAG
TCACCAGAGAGGAATACGTTGAGAAGAGGGTTAATATTCGGAACAAGATT
GAAGAGGAAGAAAAGGAGAAGCTTCAGAAGCTACTACAAGAGGAAGAGGA
GCTGCAATTGGAAAAGCGTAAAAAGCGAAAGATTAAGGGAAATTCTCGAT
TATCATTTGCTGATGATTTTGAGAGTGAAAATGAAGAGGAGAATGGAGAA
ATTGAAAATTTGAAAACAAAGAGGCTTGCGCAAGCGAAATTGGGAAAAGA
TCCAACGGTGGAGACTAGCTTTTTGCCTGACAGTGAGAGAGAGGCAGAGG
AGCAATCTGAGCGTGA
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