CX288697

Overview
NameCX288697
Unique NameCX288697
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288697 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.058e-19
Identity = 45/138 (32.61%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    1 FGLHLLVNPTAGQEMLEASASQGYKAPELIKMKDASEETDIYSFGVIMLELISGKEPINENPTPDEDFHLPTFMRNAVLDHRITDLYHPDMLLCSNSNHENPVSEEGILKFFQLAMACCSPSPSLRPNIKQVLRKLED 414
            FGL  ++      E++  + S GYKAPEL KMK  +  +D+Y+FG+++LE++ GK+P       +E   LP+ ++ AVL+    +++  + +        +P+ EEG++   +LAM CC+P  ++RP++++V+++LE+
Sbjct:  519 FGLDKIMVQAVADEIVSQAKSDGYKAPELHKMKKCNPRSDVYAFGILLLEILMGKKPGKSGRNGNEFVDLPSLVKAAVLEETTMEVFDLEAM----KGIRSPM-EEGLVHALKLAMGCCAPVTTVRPSMEEVVKQLEE 651          
BLAST of CX288697 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.246e-15
Identity = 48/139 (34.53%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    1 FGLHLLVNPTAGQEMLEASASQGYKAPELIKMKDASEETDIYSFGVIMLELISGKEPINENPTPDEDFHLPTFMRNAVLDHRITDLYHPDMLLCSNSNHENPVSEEGILKFFQLAMACCSPSPSLRPNIKQVLRKLEDL 417
            +GL  L+   AG  ++  + + GY+APEL K+K A+ +TD+YS GVI+LEL++GK P       D    LP ++  AV +    +++  ++L     N  N + +E IL   +LA+ C   +PS RP  +QV+ +L ++
Sbjct:  631 YGLSRLMTAAAGSSVIATAGALGYRAPELSKLKKANTKTDVYSLGVIILELLTGKSPSEALNGVD----LPQWVATAVKEEWTNEVFDLELL-----NDVNTMGDE-ILNTLKLALHCVDATPSTRPEAQQVMTQLGEI 759          
BLAST of CX288697 vs. ExPASy Swiss-Prot
Match: IMK2_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.627e-15
Identity = 45/139 (32.37%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    1 FGLHLLVNPTAGQEMLEASASQGYKAPELIKMKDASEETDIYSFGVIMLELISGKEPINENPTPDEDFHLPTFMRNAVLDHRITDLYHPDMLLCSNSNHENPVSEEGILKFFQLAMACCSPSPSLRPNIKQVLRKLEDL 417
            +GL  L+   A   ++  + + GY+APE  K+K+AS +TD+YS G+I+LEL++GK P      P     LP ++ + V +    +++  +++  + S     V +E +L   +LA+ C  PSP+ RP   QV+ +LE++
Sbjct:  680 YGLSRLMTAAAATNVIATAGTLGYRAPEFSKIKNASAKTDVYSLGIIILELLTGKSP----GEPTNGMDLPQWVASIVKEEWTNEVFDLELMRETQS-----VGDE-LLNTLKLALHCVDPSPAARPEANQVVEQLEEI 808          
BLAST of CX288697 vs. ExPASy Swiss-Prot
Match: Y5516_ARATH (Probable receptor kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 42/125 (33.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   67 GYKAPELIKMKDASEETDIYSFGVIMLELISGKEPINENPTPDED--FHLPTFMRNAVLDHRITDLYHPDMLLCSNSNHENPVSEEGILKFFQLAMACCSPSPSLRPNIKQVLRKLEDLGK*DLS 435
            GY APE+I+ +  S+ +D+YSFGV++LE+++GK P+ +    DE     LP ++R+ V +    +++  ++L   N        EE +++  QLA+AC + +P  RP +++V R +ED+ + D S
Sbjct:  505 GYNAPEVIETRRVSQRSDVYSFGVVILEMLTGKTPLTQPGLEDERVVIDLPRWVRSVVREEWTAEVFDVELLKFQN-------IEEEMVQMLQLALACVARNPESRPKMEEVARMIEDVRRLDQS 622          
BLAST of CX288697 vs. ExPASy Swiss-Prot
Match: Y5830_ARATH (Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.069e-14
Identity = 35/117 (29.91%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   67 GYKAPELIKMKDASEETDIYSFGVIMLELISGKEPINENPTPDEDFHLPTFMRNAVLDHRITDLYHPDMLLCSNSNHENPVSEEGILKFFQLAMACCSPSPSLRPNIKQVLRKLEDL 417
            GY+APE+++ +  + ++D+YSFGV++LE+++GK P+ ++P+ D+   LP ++++ V +   ++++  +++   N        EE +++  Q+AMAC +  P +RP +  V+R +E++
Sbjct:  521 GYRAPEVMETRKHTHKSDVYSFGVLILEMLTGKSPV-QSPSRDDMVDLPRWVQSVVREEWTSEVFDIELMRFQN-------IEEEMVQMLQIAMACVAQVPEVRPTMDDVVRMIEEI 629          
BLAST of CX288697 vs. ExPASy Swiss-Prot
Match: Y1848_ARATH (Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.069e-14
Identity = 46/139 (33.09%), Postives = 76/139 (54.68%), Query Frame = 1
Query:    1 FGLHLLVNPTAGQEMLEASASQGYKAPELIKMKDASEETDIYSFGVIMLELISGKEPINENPTPDEDFHLPTFMRNAVLDHRITDLYHPDMLLCSNSNHENPVSEEGILKFFQLAMACCSPSPSLRPNIKQVLRKLEDL 417
            FGL  LV    G      + + GY+APE+   K  S++ D+YSFGV++LELI+GK P N +   +E   LP ++++   D    +++  ++L  +         EE + +  QL + C S  P  RP + +V+RK+E+L
Sbjct:  515 FGLAQLV----GSSATNPNRATGYRAPEVTDPKRVSQKGDVYSFGVVLLELITGKAPSN-SVMNEEGVDLPRWVKSVARDEWRREVFDSELLSLATD------EEEMMAEMVQLGLECTSQHPDQRPEMSEVVRKMENL 642          
BLAST of CX288697 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14
Identity = 39/119 (32.77%), Postives = 73/119 (61.34%), Query Frame = 1
Query:   67 GYKAPELIKMKDASEETDIYSFGVIMLELISGKEPINENPTPDEDFHLPTFMRNAVLDHRITDLYHPDMLLCSNSNHENPVSEEGILKFFQLAMACCSPSPSLRPNIKQVLRKLEDLGK 423
            GY APE+++ +  + ++D+YSFGV++LEL++GK P N+    +E   LP ++ + V +    +++  +++   N        EE +++  Q+AMAC S  P  RP +++VLR +ED+ +
Sbjct:  511 GYHAPEVLETRKVTFKSDVYSFGVLLLELLTGKSP-NQASLGEEGIDLPRWVLSVVREEWTAEVFDVELMRYHN-------IEEEMVQLLQIAMACVSTVPDQRPVMQEVLRMIEDVNR 621          
BLAST of CX288697 vs. ExPASy Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.393e-13
Identity = 45/148 (30.41%), Postives = 82/148 (55.41%), Query Frame = 1
Query:    4 GLHLLVNPTAGQEMLEASASQGYKAPELIKMKDASEETDIYSFGVIMLELISGKEPINENPTPDEDFHLPTFMRNAVLDHRITDLYHPDMLLCSNSNHENPVSEEGILKFFQLAMACCSPSPSLRPNIKQVLRKLEDLGK*DLSIFAE 447
            GL  +++P A       S   GY+APE+   + +S+ +D+YSFGV++LEL++GK PI+     DE  HL  ++ + V +    +++  ++L  +N        EE +++  Q+AM+C   +   RP +  ++R +E++G    SI  E
Sbjct:  483 GLTAVMSPLAPP----ISRQAGYRAPEVTDTRKSSQLSDVYSFGVVLLELLTGKSPIH-TTAGDEIIHLVRWVHSVVREEWTAEVFDIELLRYTN-------IEEEMVEMLQIAMSCVVKAADQRPKMSDLVRLIENVGNRRTSIEPE 618          
BLAST of CX288697 vs. ExPASy Swiss-Prot
Match: Y3288_ARATH (Probable inactive receptor kinase At3g02880 OS=Arabidopsis thaliana GN=At3g02880 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 37/139 (26.62%), Postives = 77/139 (55.40%), Query Frame = 1
Query:    1 FGLHLLVNPTAGQEMLEASASQGYKAPELIKMKDASEETDIYSFGVIMLELISGKEPINENPTPDEDFHLPTFMRNAVLDHRITDLYHPDMLLCSNSNHENPVSEEGILKFFQLAMACCSPSPSLRPNIKQVLRKLEDL 417
            +GL  +++ T+    ++     GY+APE+   +  S++ D+YSFGV++LEL++GK P ++    +E   LP ++++       +D+  P++          P   E I++  ++ M+C +  P  RP++ +V R +E++
Sbjct:  489 YGLAPIISSTSAPNRID-----GYRAPEITDARKISQKADVYSFGVLILELLTGKSPTHQQ-LNEEGVDLPRWVQSVTEQQTPSDVLDPEL------TRYQPEGNENIIRLLKIGMSCTAQFPDSRPSMAEVTRLIEEV 615          
BLAST of CX288697 vs. ExPASy Swiss-Prot
Match: Y3868_ARATH (Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 38/133 (28.57%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   19 VNPTAGQEMLEASASQGYKAPELIKMKDASEETDIYSFGVIMLELISGKEPINENPTPDEDFHLPTFMRNAVLDHRITDLYHPDMLLCSNSNHENPVSEEGILKFFQLAMACCSPSPSLRPNIKQVLRKLEDL 417
            + P      L  S S GY+APE I+ +  ++++D+YSFGV++LE+++GK    +    +E   LP ++++ V +    +++  +++       ++ V EE +++  Q+AMAC S  P  RP++++V+  +E++
Sbjct:  489 IAPLMSHHTLIPSRSLGYRAPEAIETRKHTQKSDVYSFGVLLLEMLTGK-AAGKTTGHEEVVDLPKWVQSVVREEWTGEVFDVELI-----KQQHNVEEE-MVQMLQIAMACVSKHPDSRPSMEEVVNMMEEI 614          
The following BLAST results are available for this feature:
BLAST of CX288697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TMKL1_ARATH7.058e-1932.61Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]
IMK3_ARATH1.246e-1534.53Probable leucine-rich repeat receptor-like protein... [more]
IMK2_ARATH1.627e-1532.37Probably inactive leucine-rich repeat receptor-lik... [more]
Y5516_ARATH2.775e-1533.60Probable receptor kinase At5g05160 OS=Arabidopsis ... [more]
Y5830_ARATH3.069e-1429.91Probable inactive receptor kinase At5g58300 OS=Ara... [more]
Y1848_ARATH3.069e-1433.09Probable inactive receptor kinase At1g48480 OS=Ara... [more]
Y2267_ARATH6.836e-1432.77Probable inactive receptor kinase At2g26730 OS=Ara... [more]
Y4374_ARATH3.393e-1330.41Probable inactive receptor kinase At4g23740 OS=Ara... [more]
Y3288_ARATH5.787e-1326.62Probable inactive receptor kinase At3g02880 OS=Ara... [more]
Y3868_ARATH2.199e-1228.57Probable inactive receptor kinase At3g08680 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC02003D03SK IF1 Citrus clementina cDNA clone C02003D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288697 ID=CX288697; Name=CX288697; organism=Citrus clementina; type=EST; length=558bp
TTTGGTCTACATCTGCTTGTGAATCCTACTGCTGGGCAAGAAATGCTCGA
AGCCTCAGCATCTCAGGGTTATAAAGCTCCTGAACTTATCAAAATGAAGG
ATGCTAGTGAAGAGACTGATATTTACAGTTTTGGGGTAATTATGCTTGAA
CTAATTTCGGGGAAGGAACCAATCAATGAGAATCCAACTCCTGATGAGGA
TTTCCATCTGCCAACTTTCATGAGAAATGCGGTTCTTGATCATAGAATCA
CAGATTTGTACCATCCAGACATGCTTCTATGCAGCAACAGTAATCATGAA
AACCCGGTTAGTGAAGAAGGAATTCTTAAATTCTTTCAGCTTGCAATGGC
TTGTTGTTCTCCTTCACCTTCTCTTAGACCAAACATTAAACAAGTCCTTC
GGAAGCTTGAAGATCTTGGAAAATAGGATCTTTCGATTTTTGCTGAATAT
TGAAGTGGGTATTGGTGGTAGGCCACTTTGAGGTTGATTGCCTCATCTTT
TATATATTCGATTTTCCGACATCAACATAGTCAATGGTCACAACAATAGT
GATGACAA
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