CX288729

Overview
NameCX288729
Unique NameCX288729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length554
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11336 contig Ccv1_Contig11336:139..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288729 vs. ExPASy Swiss-Prot
Match: KCAB_ORYSJ (Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2)

HSP 1 Score: 340.117 bits (871), Expect = 4.216e-93
Identity = 156/183 (85.25%), Postives = 172/183 (93.99%), Query Frame = 2
Query:    2 LSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAXQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYS 550
            LSYGAWV+FGNQLDVKEAK+LLQ CRD GVNFFDNAEVYANGRAEEIMGQA+R+LGW+RSD+VVSTK+FWGGQGPNDKGLSRKHIVEG + SLKRLDMDYVDV+YCHRPD +TP+EETVRAMN+VID G AFYWGTSEWSA QITEAW +A RLDLVGPIVEQPEYN+ SRHKVE+E+LPLYS
Sbjct:   16 LSYGAWVTFGNQLDVKEAKALLQACRDAGVNFFDNAEVYANGRAEEIMGQAMRDLGWRRSDVVVSTKLFWGGQGPNDKGLSRKHIVEGLRGSLKRLDMDYVDVVYCHRPDATTPVEETVRAMNWVIDHGMAFYWGTSEWSAQQITEAWSVANRLDLVGPIVEQPEYNLFSRHKVESEFLPLYS 198          
BLAST of CX288729 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.121e-56
Identity = 96/182 (52.75%), Postives = 136/182 (74.73%), Query Frame = 2
Query:    2 LSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAXQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLY 547
            L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL +DYVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY+M  R KVE +   L+
Sbjct:   52 LGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLDYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELF 233          
BLAST of CX288729 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.199e-55
Identity = 95/182 (52.20%), Postives = 136/182 (74.73%), Query Frame = 2
Query:    2 LSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAXQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLY 547
            L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY+M  R KVE +   L+
Sbjct:   52 LGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELF 233          
BLAST of CX288729 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.566e-55
Identity = 95/182 (52.20%), Postives = 136/182 (74.73%), Query Frame = 2
Query:    2 LSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAXQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLY 547
            L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY+M  R KVE +   L+
Sbjct:   52 LGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELF 233          
BLAST of CX288729 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.566e-55
Identity = 95/182 (52.20%), Postives = 136/182 (74.73%), Query Frame = 2
Query:    2 LSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAXQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLY 547
            L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY+M  R KVE +   L+
Sbjct:   52 LGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELF 233          
BLAST of CX288729 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 2.671e-55
Identity = 95/182 (52.20%), Postives = 135/182 (74.18%), Query Frame = 2
Query:    2 LSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAXQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLY 547
            L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L  PI EQ EY+M  R KVE +   L+
Sbjct:   52 LGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELF 233          
BLAST of CX288729 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 6.579e-54
Identity = 91/182 (50.00%), Postives = 134/182 (73.63%), Query Frame = 2
Query:    2 LSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAXQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLY 547
            L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  +++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG +ASL+RL ++YVDV++ +RPD +TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +L+ P+ EQ EY++  R KVE +   LY
Sbjct:   86 LGLGTWVTFGGQISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVEVQLPELY 267          
BLAST of CX288729 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.593e-54
Identity = 91/182 (50.00%), Postives = 134/182 (73.63%), Query Frame = 2
Query:    2 LSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAXQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLY 547
            L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R KVE +   LY
Sbjct:   86 LGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELY 267          
BLAST of CX288729 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.593e-54
Identity = 91/182 (50.00%), Postives = 134/182 (73.63%), Query Frame = 2
Query:    2 LSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAXQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLY 547
            L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R KVE +   LY
Sbjct:  104 LGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELY 285          
BLAST of CX288729 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.593e-54
Identity = 91/182 (50.00%), Postives = 134/182 (73.63%), Query Frame = 2
Query:    2 LSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAXQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLY 547
            L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R KVE +   LY
Sbjct:   93 LGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELY 274          
The following BLAST results are available for this feature:
BLAST of CX288729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
KCAB_ORYSJ4.216e-9385.25Probable voltage-gated potassium channel subunit b... [more]
KCAB2_XENLA4.121e-5652.75Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN1.199e-5552.20Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT1.566e-5552.20Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE1.566e-5552.20Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_HUMAN2.671e-5552.20Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_CHICK6.579e-5450.00Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RAT8.593e-5450.00Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RABIT8.593e-5450.00Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU8.593e-5450.00Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02003G03SK IF1 Citrus clementina cDNA clone C02003G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288729 ID=CX288729; Name=CX288729; organism=Citrus clementina; type=EST; length=554bp
GCTCTCGTACGGAGCGTGGGTCAGCTTCGGGAACCAGCTGGACGTGAAGG
AGGCGAAGTCGCTCTTGCAATGCTGCCGCGACCACGGCGTCAACTTCTTC
GACAATGCCGAGGTCTACGCCAACGGCCGCGCGGAAGAGATCATGGGTCA
GGCCATTCGCGAGCTCGGGTGGAAGCGATCCGACATCGTCGTTTCCACCA
AGATCTTTTGGGGCGGCCAGGGCCCCAACGATAAAGGCCTCTCCAGAAAA
CACATTGTCGAGGGCACCAAAGCTTCCTTGAAACGCCTCGACATGGATTA
CGTCGACGTTATTTATTGTCACAGGCCGGACACGTCGACACCGATAGAGG
AGACGGTGAGGGCGATGAATTATGTGATTGATAAGGGGTGGGCGTTTTAC
TGGGGAACAAGTGAGTGGTCGGCGCANCAGATCACCGAGGCTTGGGGGAT
TGCTGAGCGCTTGGATTTGGTGGGCCCCATTGTTGAGCAACCAGAGTATA
ACATGTTGTCTAGGCACAAGGTTGAAGCTGAGTACCTCCCTTTATACTCC
AATT
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