CX288747

Overview
NameCX288747
Unique NameCX288747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10728 contig Ccv1_Contig10728:107..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288747 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.217e-35
Identity = 73/143 (51.05%), Postives = 100/143 (69.93%), Query Frame = 2 
Query:   59 HNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYAFDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLND-VDYYGGFEQEELDQLFEAMRSN 484
            ++VKV GSG+  I+ A GFG DQSVW  + P   +D+RV+L+D +G+G ++   +D NRY TL+GYA D+L + E L +   + VGHSV A+IG +ASI RP+LF+ LVM+  SP YLND  +YYGGFE+E+L  L E M  N
Sbjct:    9 NHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKN 151
The following BLAST results are available for this feature:
BLAST of CX288747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU2.217e-3551.05Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionC02004A02SK IF1 Citrus clementina cDNA clone C02004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288747 ID=CX288747; Name=CX288747; organism=Citrus clementina; type=EST; length=485bp
AAAGAAAAGAAAGCTCCGCAGATTCAGGCGAGGCGAAATGGGAATCGTGG
AAGAAGCTCACAACGTGAAAGTGACGGGGTCAGGGGAGCAAGTGATAGTG
TTGGCTCACGGCTTCGGCACCGACCAGTCGGTGTGGAAGCACCTCGTGCC
TCATCTCGTCGACGATTACCGCGTCGTTTTGTATGACAACATGGGCGCTG
GCACCACCAATCCCGACTACTTTGACTTCAACAGATACTCCACCCTCGAA
GGCTATGCCTTCGATTTGCTTGCTATTTTAGAAGAGCTGCAAATTGACTC
TTGTATTCTCGTCGGTCACTCTGTTTCCGCCATGATTGGCGCCATCGCCT
CCATCTCCCGCCCTGATCTCTTCACTAAACTCGTCATGATCTCCGGCTCT
CCTAGGTATCTCAATGATGTGGATTACTACGGAGGATTTGAGCAAGAGGA
GCTGGATCAGCTTTTTGAAGCAATGAGGTCAAATT
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