CX288773

Overview
NameCX288773
Unique NameCX288773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288773 vs. ExPASy Swiss-Prot
Match: DGDG2_SOYBN (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Glycine max GN=DGD2 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.046e-89
Identity = 150/192 (78.12%), Postives = 175/192 (91.15%), Query Frame = 1
Query:    1 VSEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGNKK-EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH 573
            +SE+IPD+VADIAVLEEPEHLTW+HHGKRWKTKFR V+GI+HTNYLEYVKREKNG +QAFLLKY N+W+V IYCHKVIRLSAATQ+Y  SIICNVHGVNPKFLEIG KK EQQQ G HAF KGAY+IGKM+WSKGYKELL+LL DH+KEL+ LEVDL+G+GED +++Q+AAEKL++ VRV+P RDHAD +FH
Sbjct:  108 ISEIIPDKVADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIIHTNYLEYVKREKNGVMQAFLLKYLNNWVVSIYCHKVIRLSAATQDYTGSIICNVHGVNPKFLEIGKKKREQQQKGEHAFTKGAYFIGKMIWSKGYKELLQLLKDHEKELSALEVDLFGSGEDSDEVQKAAEKLELAVRVHPARDHADALFH 299          
BLAST of CX288773 vs. ExPASy Swiss-Prot
Match: DGDG2_LOTJA (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 3.366e-88
Identity = 149/192 (77.60%), Postives = 174/192 (90.62%), Query Frame = 1
Query:    1 VSEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGNKK-EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH 573
            +SEVIPD+ ADIAVLEEPEHLTWFHHGKRWKTKFR V+GI+HTNYLEYVKREKNG++QAFLLKY N+W+V IYCHKVIRLSAATQ+Y+ SI+CNVHGVNPKFLEIG KK EQQQNG  AF KGAY+IGKMVWSKGYKELL L  +HQKEL+ LEVDL+G+GED +++Q+AA+KL++ VRV+P RDHAD +FH
Sbjct:  108 ISEVIPDKEADIAVLEEPEHLTWFHHGKRWKTKFRLVIGIIHTNYLEYVKREKNGQMQAFLLKYLNNWVVGIYCHKVIRLSAATQDYSGSIVCNVHGVNPKFLEIGKKKREQQQNGDQAFTKGAYFIGKMVWSKGYKELLHLFKNHQKELSALEVDLFGSGEDSDEVQKAAKKLEMAVRVHPARDHADALFH 299          
BLAST of CX288773 vs. ExPASy Swiss-Prot
Match: DGDG2_ARATH (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DGD2 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 4.549e-85
Identity = 148/192 (77.08%), Postives = 166/192 (86.46%), Query Frame = 1
Query:    1 VSEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGNKK-EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH 573
            +S+ IPDE ADIAVLEEPEHLTWFHHG++WKTKF YV+GIVHTNYLEYVKREK GR++AF LKY NSW+V IYCHKVIRLSAATQEY  SI+CNVHGVNPKFLEIG +K EQQ+     F KGAYYIGKMVWSKGYKELL+LL+ HQKELA LEVDLYG+GED  +I+EAA KL + V VYPGRDHAD +FH
Sbjct:  110 ISDAIPDEEADIAVLEEPEHLTWFHHGQKWKTKFNYVIGIVHTNYLEYVKREKQGRVKAFFLKYLNSWVVGIYCHKVIRLSAATQEYPKSIVCNVHGVNPKFLEIGLRKLEQQKLQEQPFTKGAYYIGKMVWSKGYKELLKLLEKHQKELAELEVDLYGDGEDSEEIKEAARKLDLTVNVYPGRDHADSLFH 301          
BLAST of CX288773 vs. ExPASy Swiss-Prot
Match: DGDG1_SOYBN (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Glycine max GN=DGD1 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.570e-69
Identity = 118/191 (61.78%), Postives = 150/191 (78.53%), Query Frame = 1
Query:    4 SEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGNK-KEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH 573
            S+ IP   ADIA+LEEPEHL W+HHGKRW  KF +VVGIVHTNYLEY+KREKNG LQAFL+K+ N+W+   YCHKV+RLSAATQ+   S+ICNVHGVNPKFL+IG K   +++ G  AF KGAY++GKMVW+KGYKEL++LL  H+ +L G ++D++GNGED N++Q AA +L + +    GRDHAD   H
Sbjct:  415 SQFIPSRDADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFLVKHINNWVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKIAAERELGQKAFTKGAYFLGKMVWAKGYKELIDLLAKHKADLDGFKLDVFGNGEDANEVQSAARRLDLNLNFQKGRDHADDSLH 605          
BLAST of CX288773 vs. ExPASy Swiss-Prot
Match: DGDG1_LOTJA (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.376e-65
Identity = 111/191 (58.12%), Postives = 147/191 (76.96%), Query Frame = 1
Query:    4 SEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGNK-KEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH 573
            ++ IP + ADIA+LEEPEHL W+HHG RW  KF +VVGIVHTNYLEY+KREKNG LQAFL+K+ N+W+   YC KV+RLSAATQ+   S++CNVHGVNPKFL+IG     +++ G   F KGAY++GKMVW+KGYKEL++LL  H+ +L G+++D++GNGED N++Q AA +  + +    GRDHAD   H
Sbjct:  418 AQFIPSKDADIAILEEPEHLNWYHHGTRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFLVKHINNWVARAYCDKVLRLSAATQDLPKSVVCNVHGVNPKFLKIGESIAAERELGQKGFTKGAYFLGKMVWAKGYKELIDLLAKHKADLDGVKLDVFGNGEDANEVQSAARRFDLNLNFQKGRDHADDSLH 608          
BLAST of CX288773 vs. ExPASy Swiss-Prot
Match: DGDG1_ARATH (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DGD1 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.165e-64
Identity = 111/191 (58.12%), Postives = 144/191 (75.39%), Query Frame = 1
Query:    4 SEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGNK-KEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH 573
            S+ I  + ADIA+LEEPEHL W++HGKRW  KF +VVGIVHTNYLEY+KREKNG LQAF + + N+W+   YC KV+RLSAATQ+   S++CNVHGVNPKFL IG K  E++  G  AF+KGAY++GKMVW+KGY+EL++L+  H+ EL    +D+YGNGED  ++Q AA+K  + +    GRDHAD   H
Sbjct:  448 SQFISSKDADIAILEEPEHLNWYYHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFFVNHVNNWVTRAYCDKVLRLSAATQDLPKSVVCNVHGVNPKFLMIGEKIAEERSRGEQAFSKGAYFLGKMVWAKGYRELIDLMAKHKSELGSFNLDVYGNGEDAVEVQRAAKKHDLNLNFLKGRDHADDALH 638          
The following BLAST results are available for this feature:
BLAST of CX288773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DGDG2_SOYBN1.046e-8978.13Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_LOTJA3.366e-8877.60Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_ARATH4.549e-8577.08Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG1_SOYBN4.570e-6961.78Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_LOTJA1.376e-6558.12Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_ARATH1.165e-6458.12Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC02004C04SK IF1 Citrus clementina cDNA clone C02004C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288773 ID=CX288773; Name=CX288773; organism=Citrus clementina; type=EST; length=574bp
GTATCGGAAGTCATCCCTGATGAAGTGGCAGATATTGCTGTCCTTGAGGA
GCCTGAGCATCTTACGTGGTTTCATCATGGGAAAAGATGGAAAACTAAAT
TCCGCTATGTTGTAGGAATTGTACACACCAATTACCTAGAATATGTCAAG
AGAGAGAAGAATGGACGATTACAAGCTTTTCTTCTTAAATATGCAAATAG
CTGGCTTGTTGATATCTATTGCCACAAGGTAATTAGGTTGTCTGCTGCCA
CACAGGAATATGCTAATTCCATTATCTGCAATGTTCATGGAGTCAATCCT
AAATTCCTTGAAATTGGCAACAAAAAGGAGCAGCAACAAAATGGGACCCA
TGCTTTTGCAAAGGGTGCCTACTACATTGGGAAGATGGTGTGGAGTAAAG
GCTATAAGGAGCTGCTTGAACTTCTTGATGACCATCAAAAGGAGCTAGCA
GGGCTTGAAGTGGATTTATATGGCAATGGGGAGGACTTCAATCAAATTCA
AGAAGCTGCTGAAAAGTTAAAAATAGTAGTTAGAGTTTACCCTGGACGTG
ATCATGCTGACCTCATATTCCATG
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