CX288781

Overview
NameCX288781
Unique NameCX288781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11747 contig Ccv1_Contig11747:243..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288781 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 311.997 bits (798), Expect = 1.213e-84
Identity = 151/180 (83.89%), Postives = 168/180 (93.33%), Query Frame = 2
Query:   11 NTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 550
            NTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+E+K+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIF+E  LPK+GIT TVIDPAD+ GLEAA+N   VSLFFTESPTNPFLRCVD++LVS +CHK+G +VCIDGTFATPLNQKAL+LGADLV+HSATK+
Sbjct:  201 NTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVSKICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKY 380          
BLAST of CX288781 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.438e-29
Identity = 67/179 (37.43%), Postives = 99/179 (55.31%), Query Frame = 2
Query:   14 TSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 550
            TS+Y F+  A+             Y RY NPT    EE+++ALEGAE  V  ASGMSA   ++++L  +G H++ +   +  T    +    + GI       +D+   EAA   N   LFF ESP+NP    VD+  ++++ H KGA++ +D  F TP  Q+ L LGAD+V+HSATK+
Sbjct:   43 TSSYVFRTAADAAARFAGEVPGNVYSRYTNPTVRTFEERIAALEGAEQAVATASGMSAILALVMSLCSSGDHVLVSRSVFGSTISLFDKYFKRFGIQVDYPPLSDLAAWEAACKPNT-KLFFVESPSNPLAELVDIAALAEIAHAKGALLAVDNCFCTPALQQPLKLGADVVIHSATKY 220          
BLAST of CX288781 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.780e-27
Identity = 63/164 (38.41%), Postives = 100/164 (60.98%), Query Frame = 2
Query:   59 KEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 550
            K  +   +EY R  NPT   +E  ++ LE  E+    +SGM+A T +++ L  +G H+V T D Y  T   +  VL ++GI +T +D +  E +E A+  N  +++  E+PTNP L+  D+ L++D+  K G ++ +D TF TP  Q+ L+LGAD+VLHSATK+
Sbjct:   35 KAGQHTGYEYSRTANPTRTALEALVTELESGEAGYAFSSGMAAITAVMM-LFNSGDHVVLTDDVYGGTYRVMTKVLNRLGIESTFVDTSSREEVEKAIRPNTKAIYI-ETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKY 196          
BLAST of CX288781 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.478e-26
Identity = 62/157 (39.49%), Postives = 96/157 (61.15%), Query Frame = 2
Query:   80 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 550
            +EY R GNPT   +EE ++ LEG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI   ++D +++E L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+ ++LGAD+VLHSATK+
Sbjct:   43 YEYSRSGNPTRHALEELIADLEGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTGIIYDLVDLSNLEDLKAAFKAETKAVYF-ETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFATPYLQQPIALGADIVLHSATKY 197          
BLAST of CX288781 vs. ExPASy Swiss-Prot
Match: METB_HERAU (Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.176e-25
Identity = 59/157 (37.58%), Postives = 94/157 (59.87%), Query Frame = 2
Query:   80 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 550
            +EY R  NPT   ++  ++ALE A+  ++ ASG+ AST ++L L  AG H++   D Y  T    + V+ + G++   ID AD E + AA+  N   L + E+PTNP L+   +  ++ +  + G    +D TFA+P NQ+ ++LGAD+VLHS TK+
Sbjct:   44 YEYSRTDNPTRTALQTCLAALEEAKHALVFASGLGASTTLMLML-KAGDHVICGDDVYGGTYRLFQRVMTEHGLSFDFIDMADPEAVRAAIKPNT-RLIWLETPTNPLLKLAPIAAITRVAREHGIWTIVDNTFASPYNQRPITLGADMVLHSTTKY 198          
BLAST of CX288781 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.842e-25
Identity = 61/157 (38.85%), Postives = 96/157 (61.15%), Query Frame = 2
Query:   80 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 550
            +EY R GNPT   +EE ++ LEG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI   ++D ++++ L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+ ++LGAD+VLHSATK+
Sbjct:   43 YEYSRSGNPTRHALEELIADLEGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKY 197          
BLAST of CX288781 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.842e-25
Identity = 61/157 (38.85%), Postives = 96/157 (61.15%), Query Frame = 2
Query:   80 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 550
            +EY R GNPT   +EE ++ LEG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI   ++D ++++ L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+ ++LGAD+VLHSATK+
Sbjct:   43 YEYSRSGNPTRHALEELIADLEGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKY 197          
BLAST of CX288781 vs. ExPASy Swiss-Prot
Match: MEGL_PSEPU (Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.842e-24
Identity = 61/160 (38.12%), Postives = 92/160 (57.50%), Query Frame = 2
Query:   71 RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 550
            +A   Y R  NPT  ++E +M++LEG E+ + +ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA+      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV+HSATK+
Sbjct:   54 QAGHFYSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKY 212          
BLAST of CX288781 vs. ExPASy Swiss-Prot
Match: METC_BACSU (Cystathionine beta-lyase metC OS=Bacillus subtilis GN=metC PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 2
Query:   77 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 550
            +++Y R G PT   +EE ++ALEG       +SGM+A +   L L+  G H++ T D Y  T   +  VL + GI  T +D  D   +  ++  N   + + E+P+NP L   D+K V  L  + G +  +D TF TP  Q+ L LG D+VLHSATKF
Sbjct:   46 AYDYSRSGTPTRTALEETIAALEGGTRGFAFSSGMAAISTAFL-LLSQGDHVLVTEDVYGGTFRMVTEVLTRFGIEHTFVDMTDRNEVARSIKPNT-KVIYMETPSNPTLGITDIKAVVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKF 201          
BLAST of CX288781 vs. ExPASy Swiss-Prot
Match: METC_RHIL3 (Putative cystathionine beta-lyase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=metC PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.036e-23
Identity = 56/163 (34.36%), Postives = 90/163 (55.21%), Query Frame = 2
Query:   62 EKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKF 550
            E R   + YG  G PTT  + E + ALEG+  T+++ SG++A T+  L  V AG H +     Y  TR F +T+L ++G+      P    G+E  L  +N  L  TE+P +      D+  +S + H+ GA+V +D T+ATP+  + L  G D+ +H++TK+
Sbjct:   50 ETRTQKYTYGTRGTPTTDALCEAIDALEGSAGTILVPSGLAAVTIPFLGFVAAGDHALVVDSVYGPTRHFCDTMLKRLGVEVEYYHPEIGAGIE-TLFRSNTKLVHTEAPGSNTFEMQDIPAISAVAHRHGAVVMMDNTWATPVYFRPLDHGVDISIHASTKY 211          
The following BLAST results are available for this feature:
BLAST of CX288781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
METB_ARATH1.213e-8483.89Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
METZ_PSEAE9.438e-2937.43O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
MCCB_BACSU1.780e-2738.41Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]
METC_LACLC7.478e-2639.49Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METB_HERAU2.176e-2537.58Probable cystathionine gamma-synthase (Fragment) O... [more]
METC_LACLM2.842e-2538.85Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLA2.842e-2538.85Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
MEGL_PSEPU1.842e-2438.13Methionine gamma-lyase OS=Pseudomonas putida GN=md... [more]
METC_BACSU9.141e-2437.34Cystathionine beta-lyase metC OS=Bacillus subtilis... [more]
METC_RHIL32.036e-2334.36Putative cystathionine beta-lyase OS=Rhizobium leg... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02004C12SK IF1 Citrus clementina cDNA clone C02004C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288781 ID=CX288781; Name=CX288781; organism=Citrus clementina; type=EST; length=550bp
GGCACGAGGGAATACTTCTGCTTACTTCTTTAAGAAAACTGCTGAGCTTA
TTGATTTCAAGGAGAAACGTCGTGCAAGTTTTGAATATGGGAGGTATGGA
AACCCAACAACTGTGGTCGTTGAGGAGAAGATGAGTGCACTTGAGGGGGC
TGAATCAACTGTGATTATGGCATCTGGAATGAGTGCTAGCACAGTCATGT
TGTTGGCATTGGTTCCAGCCGGTGGGCATATTGTGACAACCACTGATTGC
TACAGGAAGACTAGGATTTTCATTGAGACTGTTCTGCCCAAAATGGGAAT
CACGGCTACGGTGATTGACCCAGCTGATATGGAAGGTTTGGAGGCAGCAC
TCAACAATAACAATGTCTCACTATTCTTCACCGAGTCTCCAACCAATCCA
TTCCTGAGATGTGTGGATGTCAAACTGGTTTCAGATCTTTGCCATAAGAA
AGGAGCAATAGTTTGCATAGATGGAACCTTTGCCACACCTCTCAATCAGA
AGGCCCTCAGCCTTGGTGCTGATCTTGTACTGCACTCTGCAACAAAATTC
back to top