CX288788

Overview
NameCX288788
Unique NameCX288788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length393
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11664 contig Ccv1_Contig11664:630..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288788 vs. ExPASy Swiss-Prot
Match: BH057_ARATH (Transcription factor bHLH57 OS=Arabidopsis thaliana GN=BHLH57 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 DGAEIEVIVIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYING 258
            D  E+E  VI NHV+LK+ C R   Q+LKAIV++E+L+L  LHL I+SS   V YSFNLK+E+ CKLGSA+EIA AVHQIF  ING
Sbjct:  220 DTTEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIYSFNLKMEDGCKLGSADEIATAVHQIFEQING 305          
BLAST of CX288788 vs. ExPASy Swiss-Prot
Match: BH070_ARATH (Transcription factor bHLH70 OS=Arabidopsis thaliana GN=BHLH70 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   10 EIEVIVIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 243
            +IE  VI +HVNLKI C R+ GQLL++I+ LE LR T LHLNITS + T+V YSFNLK+E++C LGSA+EI AA+ QIF
Sbjct:  291 KIEATVIESHVNLKIQCTRKQGQLLRSIILLEKLRFTVLHLNITSPTNTSVSYSFNLKMEDECNLGSADEITAAIRQIF 369          
BLAST of CX288788 vs. ExPASy Swiss-Prot
Match: BH067_ARATH (Transcription factor bHLH67 OS=Arabidopsis thaliana GN=BHLH67 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 49/79 (62.03%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   10 EIEVIVIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNI-TSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 243
            +IE  VI NHV+LK+ C ++ GQLLK I++LE L+LT LHLNI TSS ++V YSFNLK+E++C L SA+EI AAVH+IF
Sbjct:  275 KIEATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSHSSVSYSFNLKMEDECDLESADEITAAVHRIF 353          
BLAST of CX288788 vs. ExPASy Swiss-Prot
Match: BH096_ARATH (Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.873e-16
Identity = 40/82 (48.78%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    7 AEIEVIVIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 252
            AEIEV ++ +H +LKI   +RP QLLK + +++ LRLT LHLN+T+ + +V YS ++K+EE  +L + E+IAAAV+QI   I
Sbjct:  232 AEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDSVLYSISVKVEEGSQLNTVEDIAAAVNQILRRI 313          
BLAST of CX288788 vs. ExPASy Swiss-Prot
Match: FAMA_ARATH (Transcription factor FAMA OS=Arabidopsis thaliana GN=FMA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 42/85 (49.41%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    7 AEIEVIVIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYINGS 261
            A++EV ++     +KI   RRPGQL+K I ALEDL L+ LH NIT+ E TV YSFN+KI  + +  +AE+IA+++ QIFS+I+ +
Sbjct:  316 ADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLHLSILHTNITTMEQTVLYSFNVKITSETRF-TAEDIASSIQQIFSFIHAN 399          
BLAST of CX288788 vs. ExPASy Swiss-Prot
Match: BH094_ARATH (Transcription factor bHLH94 OS=Arabidopsis thaliana GN=BHLH94 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.497e-14
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    7 AEIEVIVIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 237
            AEIEV V  +H N+KI   ++P QLLK I +L+ LRLT LHLN+T+   ++ YS ++++EE  +L + ++IA A++Q
Sbjct:  219 AEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVTTLHNSILYSISVRVEEGSQLNTVDDIATALNQ 295          
BLAST of CX288788 vs. ExPASy Swiss-Prot
Match: BH071_ARATH (Transcription factor bHLH71 OS=Arabidopsis thaliana GN=BHLH71 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.429e-11
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 1
Query:   10 EIEVIVIHNHVNLKIHCPRR-----------PGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 252
            ++EV +I  H N++I   RR           P QL K + +L+ L L+ LHL++T+ +    YS + K+EE C+L S ++IA AVH + S I
Sbjct:  208 DLEVTLIETHANIRILSRRRGFRWSTLATTKPPQLSKLVASLQSLSLSILHLSVTTLDNYAIYSISAKVEESCQLSSVDDIAGAVHHMLSII 299          
The following BLAST results are available for this feature:
BLAST of CX288788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BH057_ARATH2.227e-2361.63Transcription factor bHLH57 OS=Arabidopsis thalian... [more]
BH070_ARATH1.596e-2163.29Transcription factor bHLH70 OS=Arabidopsis thalian... [more]
BH067_ARATH4.643e-2162.03Transcription factor bHLH67 OS=Arabidopsis thalian... [more]
BH096_ARATH5.873e-1648.78Transcription factor bHLH96 OS=Arabidopsis thalian... [more]
FAMA_ARATH2.232e-1549.41Transcription factor FAMA OS=Arabidopsis thaliana ... [more]
BH094_ARATH5.497e-1445.45Transcription factor bHLH94 OS=Arabidopsis thalian... [more]
BH071_ARATH7.429e-1136.96Transcription factor bHLH71 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02004D07SK IF1 Citrus clementina cDNA clone C02004D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288788 ID=CX288788; Name=CX288788; organism=Citrus clementina; type=EST; length=393bp
GATGGGGCTGAGATTGAAGTCATTGTTATACATAATCATGTTAATCTCAA
GATTCATTGTCCGAGAAGGCCTGGTCAGTTGTTGAAAGCCATTGTAGCAC
TTGAAGATCTGAGGCTTACTTTTTTGCACCTCAATATTACTTCCTCAGAA
ACTACAGTTCATTACTCCTTCAATCTCAAGATCGAGGAAGACTGTAAGCT
AGGGTCAGCGGAAGAGATAGCAGCAGCAGTTCATCAAATATTTAGCTACA
TCAACGGTAGCTGACTGGTCTACTGATTGAAGACGTACAGCTGACTTTAA
TTGCTTAGGGAGGACTAGGTTAGAAAGAAGAAACTAAGTGGAAGAGGAAA
AAAAAAAATCAAATTACAGAAAAAAGAATAAAAATTGAGTAAA
back to top