CX288793

Overview
NameCX288793
Unique NameCX288793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6690 contig Ccv1_Contig6690:178..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288793 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.201e-15
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 2 
Query:    5 KPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXXCCGERVGKVKDPYGFTWL 382
            K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   27 KQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CX288793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH4.201e-1539.84Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC02004E01SK IF1 Citrus clementina cDNA clone C02004E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288793 ID=CX288793; Name=CX288793; organism=Citrus clementina; type=EST; length=476bp
GATGAAGCCGCAGTTGCTTGTGGAAGCACCGAAGGCTACTGACGCTGTTC
AGTTCTACAAGACCGCGTTTGGTGCCGTGGAGATCGGCCGTAGCGTGGAA
ACCAAACGCAAGGCTGAACAGGAGCTCCCACTCATCTCCTGCGCTCAACT
CGAGATTGCCGGCTCCACTTTCCTTGTCTCTGACGTTTCCGGTGACTCTG
CTGCTGCACAGACCGTGGGGACCGGATGCGTGCTTTGCTTGGAGACCGAG
GACGTGGAGGCTGCCGTCGCCAAGGCTGTGAGTGCTGGAGCTGTTGCTGA
GGGTGAGCTCGCTGAAGGCAACGGCGCGTGTTGTGGAGAGCGCGTGGGAA
AGGTCAAAGATCCTTATGGCTTCACTTGGCTCATTTGCTCCCCGGTCAAG
AAGTGCGCTGGCGTGGAAGCTTAAGAGCCGCCGGATCTGATCTTTAGATA
TTGATCTACTATCACATAACTCTCTT
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